Browse Element(s) Details


OsAffx.15721.1.S1_at

Description tigr:9634.m03199
TID=OsAffx.15721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT001232 beta-1,3-glucanase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3402011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33990OsAffx.15720.1.S1_at10/116+19794311..19795809hypothetical protein
LOC_Os06g34000Os.47463.1.S1_x_at6/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34000Os.14491.2.S1_x_at5/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34020OsAffx.15721.1.S1_at11/116+19813081..19817428Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g34030OsAffx.27923.1.S1_at10/116+19818493..19819630hypothetical protein
LOC_Os06g34040Os.19021.1.S1_at11/116+19823524..198286584-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049NANA6+19830711..19831023NA
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15721.1.S1_at--797--10111Chr06:19815030..19815054 (25 bp)
TATGTGTCGGAGACCGGATGGCCAT
LOC_Os06g34020
OsAffx.15721.1.S1_at--396--6231Chr06:19815046..19815070 (25 bp)
GATGGCCATCAAAGGGTGACACTGA
LOC_Os06g34020
OsAffx.15721.1.S1_at--418--3971Chr06:19815086..19815110 (25 bp)
CGTGGAGAACGCTCGGGCCTACAAC
LOC_Os06g34020
OsAffx.15721.1.S1_at--925--1931Chr06:19815161..19815185 (25 bp)
ACGGCAGCGGCTAGAGGTCTACCTG
LOC_Os06g34020
OsAffx.15721.1.S1_at--706--1031Chr06:19815175..19815199 (25 bp)
AGGTCTACCTGTTCGCGCTTTTCAA
LOC_Os06g34020
OsAffx.15721.1.S1_at--1131--2511Chr06:19815234..19815258 (25 bp)
AACTATGGGTTGTACCAGCCCGATG
LOC_Os06g34020
OsAffx.15721.1.S1_at--890--7031Chr06:19815272..19815296 (25 bp)
GTACAACGTTGGACTCATGCAGCAG
LOC_Os06g34020
OsAffx.15721.1.S1_at--870--5471Chr06:19816862..19816886 (25 bp)
GAACTTTGCTGGTCTATGTTTCCTC
LOC_Os06g34020
OsAffx.15721.1.S1_at--994--9851Chr06:19816935..19816957 (23 bp)
TACAGTGCCCAAATGCAAGCTCAGC
LOC_Os06g34020
OsAffx.15721.1.S1_at--158--2971Chr06:19816986..19817010 (25 bp)
AATGGCTTGACTATTGTGGACCAAA
LOC_Os06g34020
OsAffx.15721.1.S1_at--148--8651Chr06:19817000..19817024 (25 bp)
TGTGGACCAAAAGCCTCTCCAAGAC
LOC_Os06g34020
Target Sequence 
TATGTGTCGGAGACCGGATGGCCATCAAAGGGTGACACTGACGAGGTGGGCGCCACCGTGGAGAACGCTCGGGCCTACAA
CCGCAACCTATTGCTCCGGCAGGCGGCCGGCGAGGGCACGCCACTCCGGCCACGGCAGCGGCTAGAGGTCTACCTGTTCG
CGCTTTTCAACGAGAACATGAAGCCCGGGCCGACGTCGGAGCGTAACTATGGGTTGTACCAGCCCGATGGTAGGACGATG
GTGTACAACGTTGGACTCATGCAGCAGAGCACATCTGCGGCATCGCTCTCCCTCGCCGCCTCCCCAGCAACCAAGACGGA
TGCCAAGAAGAACTTTGCTGGTCTATGTTTCCTCTCATCCTTGGCCATCCTACAGTGCCCAAATGCAAGCTCAGCACAAA
GGAAGAGCTTTTGGCACAAGCAAAATGGCTTGACTATTGTGGACCAAAAGCCTCTCCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis