Browse Element(s) Details


Os.8003.1.S1_at

Description gb:AK067167.1
DB_XREF= gi:32977185
TID=Os.8003.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide methionine sulfoxide reductase (OSJNBa0027P10.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G11, full insert sequence.
FL= gb:AK067167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g414009/11Peptide methionine sulfoxide reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0008113molecular_functionprotein-methionine-S-oxide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8003.1.S1_at--606--4551NONE
GCCCAACCGCCAGGGTAATGATGTT
NONE
Os.8003.1.S1_at--273--2131Chr10:21926937..21926961 (25 bp)
ACAGGTCAGGTATCTACTACTACAC
LOC_Os10g41400
Os.8003.1.S1_at--1040--6591Chr10:21927025..21927049 (25 bp)
GATTGTCACTGAAATTCTTCCTGCA
LOC_Os10g41400
Os.8003.1.S1_at--40--991Chr10:21927069..21927093 (25 bp)
AGGAGTACCACCAGCAATACCTTGC
LOC_Os10g41400
Os.8003.1.S1_at--743--291Chr10:21927085..21927109 (25 bp)
ATACCTTGCGAAAGGCGGTCGCTTC
LOC_Os10g41400
Os.8003.1.S1_at--574--7231Chr10:21927102..21927126 (25 bp)
GTCGCTTCGGGTTCAGGCAGTCTGC
LOC_Os10g41400
Os.8003.1.S1_at--359--6852Chr10:21927174..21927198 (25 bp)
GTTTGAACCAGAACGCCACACAAGA
LOC_Os10g41400
Os.8003.1.S1_at--504--6311Chr10:21927296..21927320 (25 bp)
GATGAGCTGAACCTGGACCATGATA
LOC_Os10g41400
Os.8003.1.S1_at--371--5851Chr10:21927311..21927335 (25 bp)
GACCATGATACTTGCCGCTGATTAT
LOC_Os10g41400
Os.8003.1.S1_at--663--1191Chr10:21927364..21927388 (25 bp)
AGTATTATCCTTTTCGATGCGGGAA
LOC_Os10g41400
Os.8003.1.S1_at--202--8231Chr10:21927423..21927447 (25 bp)
GGCAATAGCCAGTAGCACTTCAGGA
NONE
Target Sequence 
GCCCAACCGCCAGGGTAATGATGTTGGGACCCAATACAGGTCAGGTATCTACTACTACACCCCTGAGCAGGAGAAGGCGG
CAAGAGAATCTCTGGAGAAGCAGCAGAAGCTTCTGAATCGGACGATTGTCACTGAAATTCTTCCTGCAAAGAGGTTCTAC
AGGGCAGAGGAGTACCACCAGCAATACCTTGCGAAAGGCGGTCGCTTCGGGTTCAGGCAGTCTGCGGAGAAGGGTTGCAA
CGACCCCATCCGTTGCTACGGGTGAAGGGCAAGTTTGAACCAGAACGCCACACAAGAACAGTGCTTGAATAAGGATAAAT
AATAGCCAGACAAAAATTATGCAGCATAATACTATTTTGTTACCTTTGTTTGTATCAATCCATCGATTGTAAGAGATGAG
CTGAACCTGGACCATGATACTTGCCGCTGATTATGTACAAACCACCTTAGAAAACTTGATATAGTATTATCCTTTTCGAT
GCGGGAAGAAAACCACTTTTTCTGATTGAATTCATTCAAATGGCAATAGCCAGTAGCACTTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis