Browse Element(s) Details


Os.8017.1.S1_at

Description gb:AF283006.1
DB_XREF= gi:10121844
TID=Os.8017.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8017 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cold acclimation protein WCOR413-like protein mRNA, complete cds.
PROD=cold acclimation protein WCOR413-like protein
FL= gb:AK060000.1 gb:AK066036.1 gb:AK060906.1 gb:AF283006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5585011/11cold acclimation protein COR413-PM1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009631biological_processcold acclimation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042631biological_processcellular response to water deprivation
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8017.1.S1_at--921--10631Chr03:31731496..31731612 (25 bp)
TTCCCTGATTGGTTAGAGCTGCCTG
LOC_Os03g55850
Os.8017.1.S1_at--177--8691Chr03:31731617..31731641 (25 bp)
TGTGATCCTTCTCATTGCTGTTGCC
LOC_Os03g55850
Os.8017.1.S1_at--889--8771Chr03:31731649..31731673 (25 bp)
TGTTTGCGAGCACCTTCCGAGGCGA
LOC_Os03g55850
Os.8017.1.S1_at--489--9291Chr03:31731664..31731688 (25 bp)
TCCGAGGCGACTTAGTTGGCATCTT
LOC_Os03g55850
Os.8017.1.S1_at--169--431Chr03:31731699..31731723 (25 bp)
ATCATTGGATGCTACCTGCTTCAAG
LOC_Os03g55850
Os.8017.1.S1_at--143--4911Chr03:31731716..31731740 (25 bp)
GCTTCAAGAGCACATCAGGGCGTCA
LOC_Os03g55850
Os.8017.1.S1_at--314--7111Chr03:31731737..31731761 (25 bp)
GTCAGGTGGATTCAGGAACGCCTTC
LOC_Os03g55850
Os.8017.1.S1_at--1078--7591Chr03:31731767..31731791 (25 bp)
GGGCAACGGAGTGTCCAACAGCATT
LOC_Os03g55850
Os.8017.1.S1_at--122--7791Chr03:31731830..31731854 (25 bp)
GGTGCTGAACTTTCTGTAGGCGCCA
LOC_Os03g55850
Os.8017.1.S1_at--650--6711Chr03:31731895..31731919 (25 bp)
GTTCGTTCTTGTGTACATGTCTTGT
LOC_Os03g55850
Os.8017.1.S1_at--927--331Chr03:31732079..31732103 (25 bp)
ATAAATTCATCTCTGTTGCCTTCTG
LOC_Os03g55850
Target Sequence 
TTCCCTGATTGGTTAGAGCTGCCTGGTGCTGTGATCCTTCTCATTGCTGTTGCCCCGAACCTGTTTGCGAGCACCTTCCG
AGGCGACTTAGTTGGCATCTTCATATGCCTCATCATTGGATGCTACCTGCTTCAAGAGCACATCAGGGCGTCAGGTGGAT
TCAGGAACGCCTTCAGGAAGGGCAACGGAGTGTCCAACAGCATTGGCATCCTCTTGCTCTTCATCTACCCTGTCTGGGCC
CTGGTGCTGAACTTTCTGTAGGCGCCACCGCTTCAGCGCTTCTCTACACCATCCAGCTCCGATCGCTGTTCGTTCTTGTG
TACATGTCTTGTACGGTGATTTGGTATCTGGTGATCTGGTAGTATCGTTTTGAGGAGATGGATAATGTATGTTTTGNACC
TCCTGCCTCCTGATGCACGTTTTCTTNGCATNTTCGTTTGTTGTAGCTTTGCTNTCAGCCCGTGTTTCGNCGTTCTGAGT
GTACAAGCGTCAATAAATTCATCTCTGTTGCCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis