Browse Element(s) Details


Os.8021.1.S1_x_at

Description gb:AK071033.1
DB_XREF= gi:32981056
TID=Os.8021.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078O09, full insert sequence.
FL= gb:AK071033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4725010/11Cytochrome P450 86A2, putative, expressed
LOC_Os02g446541/11Cytochrome P450 86A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8021.1.S1_x_at--992--1991Chr04:27842863..27842887 (25 bp)
ACTCGTTCAGGTTCGTGGCGTTCAA
LOC_Os04g47250
Os.8021.1.S1_x_at--9--8451Chr04:27842833..27842857 (25 bp)
GGCCACGCATTTGCCTCGGGAAGGA
LOC_Os04g47250
Os.8021.1.S1_x_at--421--4412Chr04:27842737..27842761 (25 bp)
GCCACCGCGTCGAGCAGAAGATGTC
LOC_Os04g47250
Os.8021.1.S1_x_at--134--8791Chr04:27842704..27842728 (25 bp)
TGTTCATGAAGCACGGGCTCCGGAT
LOC_Os04g47250
Os.8021.1.S1_x_at--1135--4691Chr04:27842597..27842621 (25 bp)
GCGGCCTGCGCTTAGAAGATCCCGG
LOC_Os04g47250
Os.8021.1.S1_x_at--1027--5851Chr04:27842580..27842604 (25 bp)
GATCCCGGGCGTTGGACGAAGTCAA
LOC_Os04g47250
Os.8021.1.S1_x_at--1069--9831Chr04:27842472..27842496 (25 bp)
TAAATCACTTGCTTTTACAGTTCAT
LOC_Os04g47250
Os.8021.1.S1_x_at--129--9851Chr04:27842457..27842481 (25 bp)
TACAGTTCATTACCAGTCGATAGAG
LOC_Os04g47250
Os.8021.1.S1_x_at--895--3691Chr04:27842383..27842407 (25 bp)
CTATGATTTTGGTTGTGCAGCCACC
LOC_Os04g47250
Os.8021.1.S1_x_at--860--10811Chr04:27842371..27842395 (25 bp)
TTGTGCAGCCACCAAAATTAAGGAG
LOC_Os04g47250
Os.8021.1.S1_x_at--105--371Chr04:27842337..27842361 (25 bp)
ATAATTAATCTCCTGTGTGTAACCC
NONE
Target Sequence 
ACTCGTTCAGGTTCGTGGCGTTCAACGCCGGGCCACGCATTTGCCTCGGGAAGGACCTCGCGTACCTGCAGATGAGGAAC
ATCGCCGGCAGCGTGCTCCTCCGCCACCGCCTGGCCGTGGCGCCGGGCCACCGCGTCGAGCAGAAGATGTCGCTCACGCT
GTTCATGAAGCACGGGCTCCGGATGGAGGTGCGCCCGCGCGACCTCGCCCCGATCGTCGACGAGCTCCGCGGCGCCGGGG
AGTACGCCGCCGCGGCGCGCGCCACCGCGGCCTGCGCTTAGAAGATCCCGGGCGTTGGACGAAGTCAATTGGAAATGGCA
AAAAAATATGTAGATAGATGAGAGTCCAAGATAGTAATTACTAAAGGGTTTGTATGGTTGGTGAGGTCATTTAAATCACT
TGCTTTTACAGTTCATTACCAGTCGATAGAGGAAATGTCTAAAGAAAACTCCAAACCTAAGATTCTTAGATCATGTAGTA
CTATGATTTTGGTTGTGCAGCCACCAAAATTAAGGAGCAATAATTAATAATTAATCTCCTGTGTGTAACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8021.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis