Browse Element(s) Details


Os.8035.1.S1_at

Description gb:AK108504.1
DB_XREF= gi:32993713
TID=Os.8035.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0487H02.21 (P0487H02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H08, full insert sequence.
FL= gb:AK108504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1942011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8035.1.S1_at--177--5971Chr01:10983183..10983207 (25 bp)
GAGAAGCCCATGGACGTGACCAGGA
LOC_Os01g19420
Os.8035.1.S1_at--139--6031Chr01:10983103..10983127 (25 bp)
GAGAGGGTCCTCACCAACTAGTCGC
LOC_Os01g19420
Os.8035.1.S1_at--394--4431Chr01:10983068..10983092 (25 bp)
GCCATGCGTGCTTGCAGTGCACTTG
LOC_Os01g19420
Os.8035.1.S1_at--1157--3451Chr01:10983054..10983078 (25 bp)
CAGTGCACTTGGGTCGTCATATGAT
LOC_Os01g19420
Os.8035.1.S1_at--387--10191Chr01:10983008..10983032 (25 bp)
TATAGTATTGTTGCCGTGCTGTTGC
LOC_Os01g19420
Os.8035.1.S1_at--1152--3991Chr01:10982994..10983018 (25 bp)
CGTGCTGTTGCAATGATCGATCTAG
LOC_Os01g19420
Os.8035.1.S1_at--399--2351Chr01:10982959..10982983 (25 bp)
AAAGCTACGCATATAGTGTGGCAAC
LOC_Os01g19420
Os.8035.1.S1_at--110--8671Chr01:10982943..10982967 (25 bp)
TGTGGCAACGTTATGTGCAATCGGC
LOC_Os01g19420
Os.8035.1.S1_at--195--7351Chr01:10982929..10982953 (25 bp)
GTGCAATCGGCAGCTATCTTAGTTA
LOC_Os01g19420
Os.8035.1.S1_at--965--8251Chr01:10982921..10982945 (25 bp)
GGCAGCTATCTTAGTTATCTATCGA
LOC_Os01g19420
Os.8035.1.S1_at--989--9471Chr01:10982876..10982900 (25 bp)
TCTGATCTATATATGGCTGCATTAT
LOC_Os01g19420
Target Sequence 
GAGAAGCCCATGGACGTGACCAGGAGCGACTGGGAGAGGCGCCACCTCGACGCCGCTCAGGTCCGCTACGCGTGCTCGGC
GAGAGGGTCCTCACCAACTAGTCGCCAACGCGATCGCCATGCGTGCTTGCAGTGCACTTGGGTCGTCATATGATATGATC
ATATCTATCCTAAATTATAGTATTGTTGCCGTGCTGTTGCAATGATCGATCTAGCTACTAGCAAAAAGCTACGCATATAG
TGTGGCAACGTTATGTGCAATCGGCAGCTATCTTAGTTATCTATCGAAATATTATTCGATCTACTTATCTGATCTATATA
TGGCTGCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis