Browse Element(s) Details


Os.8059.1.S1_at

Description gb:CB626653
DB_XREF= gi:29621642
DB_XREF=OSIIEb01A20.r
CLONE=OSIIEb01A20
TID=Os.8059.1
CNT=37
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.8059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112L20, full insert sequence
FL= gb:AK067583.1 gb:AK058450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2417011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24130OsAffx.13947.1.S1_at11/114+13769424..13772731hypothetical protein
LOC_Os04g24140Os.8241.1.S1_at10/114+13777562..13778826ribose 5-phosphate isomerase, putative, expressed
LOC_Os04g24160OsAffx.13948.1.S1_at11/114+13791068..13792295hypothetical protein
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed
LOC_Os04g24180Os.11329.1.S1_at11/114+13810029..13816528DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os04g24190OsAffx.28985.2.S1_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.28985.2.S1_x_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.27547.1.S1_x_at1/114+13819076..13821680hypothetical protein
LOC_Os04g24200OsAffx.26123.1.S1_at11/114+13822043..13824201hypothetical protein
LOC_Os04g24210NANA4+13829988..13833948retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8059.1.S1_at--346--8891Chr04:13797530..13797554 (25 bp)
TGAGTCCAAGGCAGATCCCTGGTTA
LOC_Os04g24170
Os.8059.1.S1_at--531--4271Chr04:13797513..13797537 (25 bp)
CCTGGTTATCACCTCCAATGGAAAC
LOC_Os04g24170
Os.8059.1.S1_at--949--271Chr04:13797408..13797432 (25 bp)
ATAGGCCTACTCTACATTGGCCTGG
LOC_Os04g24170
Os.8059.1.S1_at--1046--11Chr04:13797393..13797417 (25 bp)
ATTGGCCTGGCAGTGGACTGTACTT
LOC_Os04g24170
Os.8059.1.S1_at--1097--8431Chr04:13797336..13797360 (25 bp)
GGCCATGTTTGGCATCTGTTACTAT
LOC_Os04g24170
Os.8059.1.S1_at--1038--3071Chr04:13797303..13797327 (25 bp)
AATACAGGTTTCTTCCATACAAGGT
LOC_Os04g24170
Os.8059.1.S1_at--479--8891Chr04:13797276..13797300 (25 bp)
TGAGGGCTTCAATTGCGGCGAGATA
LOC_Os04g24170
Os.8059.1.S1_at--628--5251Chr04:13797216..13797240 (25 bp)
GAATCTGTTGATCAGTTTCCGATTG
LOC_Os04g24170
Os.8059.1.S1_at--229--6971Chr04:13797183..13797207 (25 bp)
GTAGCGTATGCCTGAAAACTGTTTT
LOC_Os04g24170
Os.8059.1.S1_at--1156--10591Chr04:13797160..13797184 (25 bp)
TTCTGAACTTCACTTGAGTCTCTTC
LOC_Os04g24170
Os.8059.1.S1_at--1099--6091Chr04:13797145..13797169 (25 bp)
GAGTCTCTTCATATCTCTACTGTCA
LOC_Os04g24170
Target Sequence 
TGAGTCCAAGGCAGATCCCTGGTTATCACCTCCAATGGAAACGTGAGCAATCTGTGCTGGAGAAATCCCCTGCCAGTTGC
CCTACTAACTGAAGAAAACCACAACAAATGGTCTAGAAGAAAATAGGCCTACTCTACATTGGCCTGGCAGTGGACTGTAC
TTGCAAATGTACAAAGTTTTTGCTGGAGAAAAATGGCCATGTTTGGCATCTGTTACTATGCCCACAAAATACAGGTTTCT
TCCATACAAGGTATTGAGGGCTTCAATTGCGGCGAGATACGTGACATGGGGAGAGATTGCTGGCAACGCCAAATGAATCT
GTTGATCAGTTTCCGATTGNACACGTTGTAGCGTATGCCTGAAAACTGTTTTCTGAACTTCACTTGAGTCTCTTCATATC
TCTACTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis