Browse Element(s) Details


Os.8097.1.A1_at

Description gb:AK120085.1
DB_XREF= gi:37989708
TID=Os.8097.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020G10, full insert sequence.
FL= gb:AK120085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2804010/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28000NANA2+16574486..16575182retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28010OsAffx.22947.2.S1_x_at8/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.3.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.1.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.5.S1_x_at2/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28020NANA2+16585839..16589351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28030OsAffx.2771.1.S1_at10/112+16590788..16592851hypothetical protein
LOC_Os02g28040Os.8097.1.A1_at10/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28040Os.52081.1.S1_at1/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28050OsAffx.12243.1.S1_at11/112+16609343..16610435hypothetical protein
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8097.1.A1_at--356--10131Chr02:16598358..16598382 (25 bp)
TATGCATGTTGAGGGTGTCACTGCC
LOC_Os02g28040
Os.8097.1.A1_at--804--8731Chr02:16598343..16598367 (25 bp)
TGTCACTGCCCTTCGTCAACTTGTA
LOC_Os02g28040
Os.8097.1.A1_at--815--4411NONE
GCCAGCATTTGAGGAGCTTTCTCGT
NONE
Os.8097.1.A1_at--24--3411Chr02:16597234..16597258 (25 bp)
CAGCATCTCTGCAAGGGAAGCGGAA
LOC_Os02g28040
Os.8097.1.A1_at--896--6011Chr02:16597200..16597224 (25 bp)
GAGAGATGGCTCTGTTACAGCTGCT
LOC_Os02g28040
Os.8097.1.A1_at--146--6771Chr02:16597187..16597211 (25 bp)
GTTACAGCTGCTGCCGTAGGTGCAT
LOC_Os02g28040
Os.8097.1.A1_at--454--10071Chr02:16597171..16597195 (25 bp)
TAGGTGCATCACTTGGTGCCGGACT
LOC_Os02g28040
Os.8097.1.A1_at--137--8191Chr02:16597102..16597126 (25 bp)
GGAAGCCATGACTACTTCATCGTTT
LOC_Os02g28040
Os.8097.1.A1_at--836--7851Chr02:16596944..16596968 (25 bp)
GGTAGTCCATAGCATAGTGCCACAT
LOC_Os02g28040
Os.8097.1.A1_at--465--9551Chr02:16596882..16596906 (25 bp)
TCTTTGCTTAAGATGGCGCTGTTAA
LOC_Os02g28040
Os.8097.1.A1_at--425--5612Chr05:10894213..10894490 (25 bp)
GACAAGCCAGTTTCATCTTCATTTG
NONE
Target Sequence 
TATGCATGTTGAGGGTGTCACTGCCCTTCGTCAACTTGTACATCAAGTAATTCNCAGCAATGAAGAGCCAGCATTTGAGG
AGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCATCTCTGCAAGGGAAGCGGAAGCCCCAGAAG
AGAGATGGCTCTGTTACAGCTGCTGCCGTAGGTGCATCACTTGGTGCCGGACTNGGGGTTGTAATGGCTGTAATAATGGG
AGCTGCGTCAGCTCTCCGGAAGCCATGACTACTTCATCGTTTTCTTTTCACCTATTTATAACTTACAATAATAGNGTATA
GTTAGCCCATATATGCNCCTGTATGACTGAGGAATGCCTGGAACAAGGCTCTAGTGTAGACCNCAGAAAAGAGGTTAGTG
CNCCATNTATATATAGGTAGTCCATAGCATAGTGCCACATTTGGCAGTGTATAGAATAGGTTAATATTAGCGATTCATCT
TTGCTTAAGATGGCGCTGTTAAGTACAGTCTNTGATCTCTGTCAGACAAGCCAGTTTCATCTTCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8097.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis