Browse Element(s) Details


Os.8160.1.S1_at

Description gb:AK070521.1
DB_XREF= gi:32980545
TID=Os.8160.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055F19, full insert sequence.
FL= gb:AK105018.2 gb:AK070521.1 gb:AK099565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1031011/11Fumarylacetoacetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified
LOC_Os02g10280OsAffx.27496.1.S1_x_at1/112+5396243..5399038hAT family dimerisation domain containing protein
LOC_Os02g10290Os.27124.1.S1_at10/112+5404703..5410735Copper-transporting ATPase 3, putative, expressed
LOC_Os02g10300Os.10004.1.S1_s_at11/112+5411327..5414290Exopolygalacturonase precursor, putative, expressed
LOC_Os02g10310Os.8160.1.S1_at11/112+5414917..5418652Fumarylacetoacetase, putative, expressed
LOC_Os02g10320Os.51818.1.S1_at10/112+5422137..54249243-oxoacyl-synthase, mitochondrial precursor, putative, expressed
LOC_Os02g10330NANA2+5428867..5431872hypothetical protein
LOC_Os02g10340OsAffx.20387.1.S1_x_at1/112+5432508..5438758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009072biological_processaromatic amino acid family metabolism
GO:0004334molecular_functionfumarylacetoacetase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8160.1.S1_at--415--6091Chr02:5415794..5415814 (21 bp)
GAGTAACTTCAAGCATCTGTATTGG
LOC_Os02g10310
Os.8160.1.S1_at--1091--8511Chr02:5415682..5415706 (25 bp)
TGGACTTTAACACAGCAACTAGCAC
LOC_Os02g10310
Os.8160.1.S1_at--587--5151Chr02:5415668..5415692 (25 bp)
GCAACTAGCACACCACACTGTTAAT
LOC_Os02g10310
Os.8160.1.S1_at--398--2571Chr02:5415613..5415635 (23 bp)
AACTGGCACACTAAGCGGACCTGAG
LOC_Os02g10310
Os.8160.1.S1_at--478--9911Chr02:5415444..5415468 (25 bp)
TATCAGTTGGAAACTCGACCCGCAA
LOC_Os02g10310
Os.8160.1.S1_at--456--9371Chr02:5415430..5415454 (25 bp)
TCGACCCGCAAGTTCCTAGAAGATG
LOC_Os02g10310
Os.8160.1.S1_at--505--6151Chr02:5415400..5415424 (25 bp)
GAGGTCATCTTGACAGCTTGTTGCA
LOC_Os02g10310
Os.8160.1.S1_at--1054--911Chr02:5415251..5415275 (25 bp)
AGGCTACAATGTCGGATTCGGAACC
LOC_Os02g10310
Os.8160.1.S1_at--1007--5091Chr02:5415225..5415249 (25 bp)
GCACTGGGAAGGTTCTGCCTGCACT
LOC_Os02g10310
Os.8160.1.S1_at--1051--3831Chr02:5415207..5415231 (25 bp)
CTGCACTTCCATGATCCAACATATA
LOC_Os02g10310
Os.8160.1.S1_at--582--1331Chr02:5415183..5415207 (25 bp)
AGAGGATAGCCTGCTTTCATCTCAT
LOC_Os02g10310
Target Sequence 
GAGTAACTTCAAGCATCTGTATTGGACTTTAACACAGCAACTAGCACACCACACTGTTAATGGATGCAATCTGAGACCAG
GGGATATGTTTGCAACTGGCACACTAAGCGGACCTGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGG
CAGAAGGAGATATCAGTTGGAAACTCGACCCGCAAGTTCCTAGAAGATGGGGATGAGGTCATCTTGACAGCTTGTTGCAA
GGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCTGCACTTCCATGATCCAACATATAGAGGA
TAGCCTGCTTTCATCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis