Browse Element(s) Details


Os.8198.1.S1_at

Description gb:AK103781.1
DB_XREF= gi:32988990
TID=Os.8198.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145G16, full insert sequence.
FL= gb:AK103781.1 gb:AK107167.1 gb:AK105990.1 gb:AK109485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3417011/11CAF1 family ribonuclease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein
LOC_Os08g34190Os.50818.1.S1_at11/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34190OsAffx.2825.1.S1_x_at1/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34200NANA8+21306118..21307050hypothetical protein
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8198.1.S1_at--388--4691Chr08:21286589..21286613 (25 bp)
GCGGCATCGACTTCGATCGGTTCGC
LOC_Os08g34170
Os.8198.1.S1_at--1002--1091Chr08:21286688..21286712 (25 bp)
AGTGGATCACCTTCCACAGCGGGTA
LOC_Os08g34170
Os.8198.1.S1_at--376--4451Chr08:21286771..21286795 (25 bp)
GCCTTCTTTGACCTCATCAGAATCT
LOC_Os08g34170
Os.8198.1.S1_at--222--391Chr08:21286786..21286810 (25 bp)
ATCAGAATCTACTTCCCGGTGCTCT
LOC_Os08g34170
Os.8198.1.S1_at--399--9611Chr08:21286826..21286850 (25 bp)
TCATGAGGTTCTGCAGCAACCTCCA
LOC_Os08g34170
Os.8198.1.S1_at--273--8331Chr08:21286865..21286889 (25 bp)
GGCTCGGTGAGCTTCTTGATGTCAA
LOC_Os08g34170
Os.8198.1.S1_at--1042--9471Chr08:21286918..21286942 (25 bp)
TCTGACTCGCTGTTGACCCTCGGGT
LOC_Os08g34170
Os.8198.1.S1_at--465--8911Chr08:21286931..21286955 (25 bp)
TGACCCTCGGGTGCTACAACAAGAT
LOC_Os08g34170
Os.8198.1.S1_at--911--7431Chr08:21286963..21286987 (25 bp)
GTGTACTTCAAAGGATCGACCGAGA
LOC_Os08g34170
Os.8198.1.S1_at--402--4091Chr08:21286979..21287003 (25 bp)
CGACCGAGAAGCATGCCGGTGTGTT
LOC_Os08g34170
Os.8198.1.S1_at--999--3971Chr08:21286995..21287019 (25 bp)
CGGTGTGTTGTATGGGCTTGTTATT
LOC_Os08g34170
Target Sequence 
GCGGCATCGACTTCGATCGGTTCGCCGCTGAGGGGGCCGACCCGATCCGCTTCGCCGAGCTGCTCATGTCGTCGGGCGTC
GTGCTCAACGCCGACGTGCAGTGGATCACCTTCCACAGCGGGTACGACTTCGGNTACCTGCTCAGGCTGCTCACCGGCCG
GAACCTGCCGGACAACATGCCCGCCTTCTTTGACCTCATCAGAATCTACTTCCCGGTGCTCTACGACATCAAGCACCTCA
TGAGGTTCTGCAGCAACCTCCACGGCGGCCTGAGCAGGCTCGGTGAGCTTCTTGATGTCAAGCGTGTGGGGACCTGCCAC
CAGGCCGGCTCTGACTCGCTGTTGACCCTCGGGTGCTACAACAAGATCAAGGAGGTGTACTTCAAAGGATCGACCGAGAA
GCATGCCGGTGTGTTGTATGGGCTTGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis