Browse Element(s) Details


Os.820.1.S1_at

Description gb:AK068755.1
DB_XREF= gi:32978780
TID=Os.820.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (P0702D12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence.
FL= gb:AK104388.1 gb:AK068755.1 gb:AK104781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1902010/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18980NANA1+10721000..10721317transposon protein, putative, unclassified
LOC_Os01g18990NANA1+10729390..10731345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19000NANA1+10731755..10736110retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19010Os.46314.2.S1_x_at4/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.3.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.32036.1.S1_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010Os.47114.1.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.5.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19020Os.820.1.S1_s_at11/111+10745381..10747011Peroxidase family protein, expressed
LOC_Os01g19020Os.820.1.S1_at10/111+10745381..10747011Peroxidase family protein, expressed
LOC_Os01g19030Os.46012.3.S1_x_at8/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19030Os.46012.2.S1_x_at7/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19030Os.27088.1.A1_x_at3/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19040OsAffx.31018.3.S1_x_at11/111+10761709..10769039hypothetical protein
LOC_Os01g19040OsAffx.31018.2.S1_x_at10/111+10761709..10769039hypothetical protein
LOC_Os01g19040Os.50578.1.S1_x_at6/111+10761709..10769039hypothetical protein
LOC_Os01g19050Os.45774.1.S1_at11/111+10769766..10774723transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.820.1.S1_at--111--7211Chr01:10745936..10745960 (25 bp)
GTCGTCGCCAGGTTCATGCCGGGCT
LOC_Os01g19020
Os.820.1.S1_at--391--9611Chr01:10745923..10745947 (25 bp)
TCATGCCGGGCTTCGTCAGCCGCGT
LOC_Os01g19020
Os.820.1.S1_at--834--4651Chr01:10745902..10745926 (25 bp)
GCGTCCGCAAGATCAGCGACTTCCT
LOC_Os01g19020
Os.820.1.S1_at--974--1891Chr01:10745801..10745825 (25 bp)
ACGTCGCTCTCCAAGGTCCACGAGT
LOC_Os01g19020
Os.820.1.S1_at--512--3031Chr01:10745768..10745792 (25 bp)
AATGCCACCCTTTGGGACTCCGACT
LOC_Os01g19020
Os.820.1.S1_at--737--4531Chr01:10745668..10745692 (25 bp)
GCGCCATCAACCACTTGTACTAAAT
LOC_Os01g19020
Os.820.1.S1_at--318--4371Chr01:10745658..10745682 (25 bp)
CCACTTGTACTAAATGCATTGCATG
LOC_Os01g19020
Os.820.1.S1_at--151--3571Chr01:10745488..10745512 (25 bp)
CATAAGTTAATCATACAAATCTGGA
LOC_Os01g19020
Os.820.1.S1_at--1156--7551NONE
GGGCCTTTGTAGTTTATACATAGGT
NONE
Os.820.1.S1_at--941--8751Chr01:10745412..10745436 (25 bp)
TGTAGTTTATACATAGGTTTCGAAA
LOC_Os01g19020
Os.820.1.S1_at--515--7871Chr01:10745397..10745421 (25 bp)
GGTTTCGAAACAACTATTCATATGT
LOC_Os01g19020
Target Sequence 
GTCGTCGCCAGGTTCATGCCGGGCTTCGTCAGCCGCGTCCGCAAGATCAGCGACTTCCTCGACAACACCTACTACCACAA
CAACCTCGCCAANGATCGTCACCTTCCACTCCGACTGGCAGCTGCTCACGGACGCCACGTCGCTCTCCAAGGTCCACGAG
TACGCCGACAATGCCACCCTTTGGGACTCCGACTTCTCCGACTCGCTGCTCAAGCTCAGCCAGCTGCCCATGCCGGAGGG
GAGCAAGGGGGAGATCAGGAAGAAGTGCAGCGCCATCAACCACTTGTACTAAATGCATTGCATGCATGGACACAAGACGA
CCACACAGAGACGATGATCAACGACGACTATGCTTGTAGTAGATTGATTTGGCTTTCACACATCCATTCTTTTGATTTCC
ATTTGTTGTAATTTGTTCTCTGTAATTTCTCAGCCATGTTAATCTGTTACATAAGTTAATCATACAAATCTGGATATAAT
AAAAATATAATTAACTGCGATGTTAATTAANNANNANNGGGCCTTTGTAGTTTATACATAGGTTTCGAAACAACTATTCA
TATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis