Browse Element(s) Details


Os.8202.1.S1_at

Description gb:AJ276277.2
DB_XREF= gi:21622527
TID=Os.8202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8202 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for phospholipase C (plc1 gene)
DEF=Oryza sativa partial mRNA for phospholipase C (plc1 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g375609/11phospholipase C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37520OsAffx.7821.1.S1_x_at11/1112+22994395..22994844hypothetical protein
LOC_Os12g37530Os.8465.1.S1_a_at11/1112+22997410..23001992flagellar biosynthesis protein FLHA, putative, expressed
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0007165biological_processsignal transduction
GO:0007242biological_processintracellular signaling cascade
GO:0004435molecular_functionphosphoinositide phospholipase C activity
GO:0004629molecular_functionphospholipase C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8202.1.S1_at--1034--1011Chr12:23019489..23019513 (25 bp)
AGGTACAAGTCTGTCAGGCTCCTCA
LOC_Os12g37560
Os.8202.1.S1_at--462--9351Chr12:23019520..23019544 (25 bp)
TCGACTTCCTCTAGCTAGCTTTCTA
LOC_Os12g37560
Os.8202.1.S1_at--1147--4851Chr12:23019549..23019573 (25 bp)
GCTAGTGCTGCTGCCAAAACCAGAA
LOC_Os12g37560
Os.8202.1.S1_at--680--6891Chr12:23019585..23019609 (25 bp)
GTATCTTACTAGTTTTCTAGGCTTC
LOC_Os12g37560
Os.8202.1.S1_at--336--4911Chr12:23019605..23019629 (25 bp)
GCTTCTTCAGCTGGTGCATATATGT
LOC_Os12g37560
Os.8202.1.S1_at--375--10811Chr12:23019654..23019678 (25 bp)
TTGTAATCACACATGCATCTTGCAT
LOC_Os12g37560
Os.8202.1.S1_at--148--4851Chr12:23019699..23019723 (25 bp)
GCTAGCATGGTTGGTAGGAATACAC
LOC_Os12g37560
Os.8202.1.S1_at--13--2091Chr12:23019726..23019750 (25 bp)
ACATTTTGTGCGATTTTGTTGGCTA
LOC_Os12g37560
Os.8202.1.S1_at--278--8811Chr12:23019742..23019766 (25 bp)
TGTTGGCTATATCTAGTATTCTAGT
LOC_Os12g37560
Os.8202.1.S1_at--924--5731NONE
TAAGACGTCGAGCTCTAAGTAAGTA
NONE
Os.8202.1.S1_at--517--8711NONE
TCTAAGTAAGTAACGGCCGCCACCG
NONE
Target Sequence 
AGGTACAAGTCTGTCAGGCTCCTCATGCGCTTCGACTTCCTCTAGCTAGCTTTCTACCTAGCTAGTGCTGCTGCCAAAAC
CAGAATACCAGATGATGTATCTTACTAGTTTTCTAGGCTTCTTCAGCTGGTGCATATATGTACTATGGATGTAGATGTAC
TATTTTTGTAATCACACATGCATCTTGCATGTCTTGATAATGATAATAATGCTAGCATGGTTGGTAGGAATACACATACA
TTTTGTGCGATTTTGTTGGCTATATCTAGTATTCTAGTCAGTGATATTTATCAAAAAAAAAAAAAAAAAAAAGGGCGGCC
GCTAAGTAAGTAAGACGTCGAGCTCTAAGTAAGTAACGGCCGCCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis