Browse Element(s) Details


OsAffx.20001.1.S1_at

Description tigr:9640.m03649
TID=OsAffx.20001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3758011/11multidrug-resistance associated protein 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20001.1.S1_at--206--4931Chr12:23042626..23042650 (25 bp)
GCTTGTCGAGCCTTCTGGAGGAAAG
LOC_Os12g37580
OsAffx.20001.1.S1_at--140--7591Chr12:23042683..23042707 (25 bp)
GGGCTTACATGACTTACGATCTCGA
LOC_Os12g37580
OsAffx.20001.1.S1_at--893--6411Chr12:23042700..23042724 (25 bp)
GATCTCGAATTGGTCTTATTCCTCA
LOC_Os12g37580
OsAffx.20001.1.S1_at--200--6371Chr12:23042726..23042750 (25 bp)
GATCCTATACTTTTCAATGGTTCCA
LOC_Os12g37580
OsAffx.20001.1.S1_at--674--6471Chr12:23042754..23042778 (25 bp)
GATACAATTTGGATCCTCATGGGCA
LOC_Os12g37580
OsAffx.20001.1.S1_at--692--3751Chr12:23042769..23042793 (25 bp)
CTCATGGGCATTTCTCGGACAAACA
LOC_Os12g37580
OsAffx.20001.1.S1_at--1149--5411Chr12:23043565..23043589 (25 bp)
GAAGCCGCATCTTGATCCTTGACGA
LOC_Os12g37580
OsAffx.20001.1.S1_at--912--531Chr12:23043675..23043699 (25 bp)
ATCGCGCATCGGATTCCAACAGTGA
LOC_Os12g37580
OsAffx.20001.1.S1_at--362--3851Chr12:23043704..23043728 (25 bp)
CTGCACCAGGGTACTTGTTGTCAAT
LOC_Os12g37580
OsAffx.20001.1.S1_at--1129--7791Chr12:23044075..23044099 (25 bp)
GGTCGAGTATGAAGAGCCCCAGAAA
LOC_Os12g37580
OsAffx.20001.1.S1_at--811--8851Chr12:23044101..23044125 (25 bp)
TGATGCAGACTGAAGGATCCTTTTT
LOC_Os12g37580
Target Sequence 
GCTTGTCGAGCCTTCTGGAGGAAAGATAACCATTGATGGTCAAGACATTACAACAATGGGCTTACATGACTTACGATCTC
GAATTGGTCTTATTCCTCAAGATCCTATACTTTTCAATGGTTCCATAAGATACAATTTGGATCCTCATGGGCATTTCTCG
GACAAACAAATCTGGGAAGTTCTAGGAAAATGTCAACTTGATGAAGTAATTAATGAGAAGAAAGGGTTGGATTCACTTGT
TGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCA
TCTTGATCCTTGACGAGGCTACAGCATCAATGGACAATGCAACTGATGCTGTCATTCAGAAAACCGTCAGGACAGAATTA
AAAGACAGCACAATCATCACAATCGCGCATCGGATTCCAACAGTGATGGACTGCACCAGGGTACTTGTTGTCAATGATGG
GGAAATGGTCGAGTATGAAGAGCCCCAGAAACTGATGCAGACTGAAGGATCCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis