Browse Element(s) Details


Os.27401.1.S1_at

Description gb:AK067785.1
DB_XREF= gi:32977803
TID=Os.27401.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120E24, full insert sequence.
FL= gb:AK067785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3763011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27401.1.S1_at--230--2071Chr12:23071121..23071145 (25 bp)
ACATTGACGGCATTCTTGGTTTCTC
LOC_Os12g37630
Os.27401.1.S1_at--1104--2951Chr12:23071158..23071182 (25 bp)
AATGGCAGCCTTGTTCTGCAGACAG
LOC_Os12g37630
Os.27401.1.S1_at--779--5031Chr12:23071185..23071209 (25 bp)
GCAGAAGACTTGTGGCTCCCTCAAA
LOC_Os12g37630
Os.27401.1.S1_at--128--8591Chr12:23071233..23071257 (25 bp)
TGGTTATCCAGCACCGATCATAAGT
LOC_Os12g37630
Os.27401.1.S1_at--887--2711Chr12:23071344..23071368 (25 bp)
AAGCACCGAACTCGCGAATCGATTT
LOC_Os12g37630
Os.27401.1.S1_at--564--10111Chr12:23071401..23071425 (25 bp)
TATGGGCCATATAATTCCTACTCGG
LOC_Os12g37630
Os.27401.1.S1_at--674--3771Chr12:23071421..23071445 (25 bp)
CTCGGCCGCCCTTTATTGATAAAAT
LOC_Os12g37630
Os.27401.1.S1_at--477--691Chr12:23071517..23071541 (25 bp)
ATGACCCCTCTTTTGATGCATATCA
LOC_Os12g37630
Os.27401.1.S1_at--887--6051Chr12:23071548..23071572 (25 bp)
GAGTTGTTCTATGCTCATGCTGACT
LOC_Os12g37630
Os.27401.1.S1_at--1046--8931Chr12:23071568..23071592 (25 bp)
TGACTGTATGGTTTGCAGCCACCTT
LOC_Os12g37630
Os.27401.1.S1_at--1042--3291Chr12:23071594..23071618 (25 bp)
CACTACTTTGAACCCCTATTGATTT
LOC_Os12g37630
Target Sequence 
ACATTGACGGCATTCTTGGTTTCTCCCAGGGCGCAGCAATGGCAGCCTTGTTCTGCAGACAGCAGCAGAAGACTTGTGGC
TCCCTCAAATTCAGGTTTGGGATATTCTGCTCTGGTTATCCAGCACCGATCATAAGTGATTTTGACGGTGAGCCAATTAA
GCTCCCCTCGCTTCATTGCTTTGGCAACTCTGAAGATCATGACAGGCAGATAGCAAACAGGGCAAGCACCGAACTCGCGA
ATCGATTTGATAAGAGTTGTCGCTCTGTTATTGAGCATGATATGGGCCATATAATTCCTACTCGGCCGCCCTTTATTGAT
AAAATAAAAGAGTTTCTGTCCAATTTTATTTGAAATGTTTGGAAATAAGGCAATATGCTTTGTTGTAAGTTAACTTATGA
CCCCTCTTTTGATGCATATCATCTGTTGAGTTGTTCTATGCTCATGCTGACTGTATGGTTTGCAGCCACCTTCCACTACT
TTGAACCCCTATTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis