Browse Element(s) Details


Os.10856.1.S1_at

Description gb:AK102247.1
DB_XREF= gi:32987456
TID=Os.10856.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088F06, full insert sequence.
FL= gb:AK102247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3764011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004251molecular_functionX-Pro dipeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10856.1.S1_at--1138--2771Chr12:23077287..23077311 (25 bp)
AAGAGAACGCCCCAGATAGGTACCG
LOC_Os12g37640
Os.10856.1.S1_at--2--5311Chr12:23077496..23077520 (25 bp)
GAAGGAGATCTCTCACATAACCACC
LOC_Os12g37640
Os.10856.1.S1_at--108--3571Chr12:23077511..23077535 (25 bp)
CATAACCACCCTTATGAACATGGGT
LOC_Os12g37640
Os.10856.1.S1_at--853--7051Chr12:23077537..23077561 (25 bp)
GTAACTCCATGATGGATGCCCATGA
LOC_Os12g37640
Os.10856.1.S1_at--265--611Chr12:23077552..23077576 (25 bp)
ATGCCCATGAGCTGAGGGCTGCCTG
LOC_Os12g37640
Os.10856.1.S1_at--1147--5331Chr12:23077584..23077608 (25 bp)
GAAGTTCAGACAATGCTGTCCTGAT
LOC_Os12g37640
Os.10856.1.S1_at--440--5611Chr12:23077592..23077616 (25 bp)
GACAATGCTGTCCTGATGCATCATC
LOC_Os12g37640
Os.10856.1.S1_at--217--2071Chr12:23077657..23077681 (25 bp)
ACATTCATTCTTCGTTAAAGCTGAG
LOC_Os12g37640
Os.10856.1.S1_at--1157--651Chr12:23077684..23077708 (25 bp)
ATGAATCGGGATTATGAAGGCTCAA
LOC_Os12g37640
Os.10856.1.S1_at--901--5971Chr12:23077726..23077750 (25 bp)
GAGAAACCCGAACCACCCTGATCGT
LOC_Os12g37640
Os.10856.1.S1_at--58--2651Chr12:23077791..23077815 (25 bp)
AACCAGCTGTTTTCAGTGTTTGCAA
LOC_Os12g37640
Target Sequence 
AAGAGAACGCCCCAGATAGGTACCGNGGCATCGGAATTAGGATCGAGGACGAGGTCCTCATCACNGAGTCNGGTCACGAG
GTCCTGACGGCGTCGGTGCCGAAGGAGATCTCTCACATAACCACCCTTATGAACATGGGTAGTAACTCCATGATGGATGC
CCATGAGCTGAGGGCTGCCTGCAGTTGAGAAGTTCAGACAATGCTGTCCTGATGCATCATCCCTCTTCCCTCCAGCGATC
NTCGCATCCAAATTCCAATTNACATTCATTCTTCGTTAAAGCTGAGAGATGAATCGGGATTATGAAGGCTCAANTGGGGT
TATGNTTTTTGAGAAACCCGAACCACCCTGATCGTNTCAGGGCNGTNCGGGTTTTTCNCTGGTTTTCACGAGAAAAACCA
GCTGTTTTCAGTGTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis