Browse Element(s) Details


Os.20224.1.S1_at

Description gb:AK072403.1
DB_XREF= gi:32982426
TID=Os.20224.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080H01, full insert sequence.
FL= gb:AK072403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3769011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20224.1.S1_at--1108--651Chr12:23102088..23102112 (25 bp)
ATGCAAGCCAGCTCGGTGATCACCA
LOC_Os12g37690
Os.20224.1.S1_at--722--9751Chr12:23102057..23102081 (25 bp)
TAATAGTACCACTGCCATGGGCGAT
LOC_Os12g37690
Os.20224.1.S1_at--399--3511Chr12:23102042..23102066 (25 bp)
CATGGGCGATGCTCATGGGATGCCA
LOC_Os12g37690
Os.20224.1.S1_at--522--591Chr12:23102023..23102047 (25 bp)
ATGCCAGTGATGACATCGTCGTCGT
LOC_Os12g37690
Os.20224.1.S1_at--722--7191Chr12:23102000..23102024 (25 bp)
GTCGGACTCGTTCGCGACATCAGAG
LOC_Os12g37690
Os.20224.1.S1_at--617--6091Chr12:23101873..23101897 (25 bp)
GAGTCAGAGCAACTTCATCCTCATG
LOC_Os12g37690
Os.20224.1.S1_at--1088--3531Chr12:23101858..23101882 (25 bp)
CATCCTCATGAGCATAGCCAGTTTC
LOC_Os12g37690
Os.20224.1.S1_at--819--1691Chr12:23101843..23101867 (25 bp)
AGCCAGTTTCAGGATCCAGATCTTG
LOC_Os12g37690
Os.20224.1.S1_at--1055--571Chr12:23101830..23101854 (25 bp)
ATCCAGATCTTGTTGGTTGGGTTCA
LOC_Os12g37690
Os.20224.1.S1_at--940--9471Chr12:23101798..23101822 (25 bp)
TCTGAGGGCATTTCCGAGAATTTTT
LOC_Os12g37690
Os.20224.1.S1_at--881--1331Chr12:23101648..23101672 (25 bp)
AGAGTCAGCTTATTCTAACTTCAAA
LOC_Os12g37690
Target Sequence 
ATGCAAGCCAGCTCGGTGATCACCATGGGTATAATAGTACCACTGCCATGGGCGATGCTCATGGGATGCCAGTGATGACA
TCGTCGTCGTCGGACTCGTTCGCGACATCAGAGTCATACGATGGGGGCCTTTATGCAAATGTGCAGGACAATGANATGGT
GAANGGTGGGGACTACTGGATGCAGGGAGCAAATAAAGGGTTTTGTAGTAATTATGAGTCAGAGCAACTTCATCCTCATG
AGCATAGCCAGTTTCAGGATCCAGATCTTGTTGGTTGGGTTCANGGCTTTTCTGAGGGCATTTCCGAGAATTTTTGGAGC
TTGGAGGACATTTGGAAGATGTAGTGAATTTTGCATTAATTTGTATTGTGGCTATATATACACATACGTACAGGAGTATA
CATTTTATAATATTGATTGATAACTCGTGGAACAAAGATTAGAGTCAGCTTATTCTAACTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis