Browse Element(s) Details


Os.26814.2.S1_at

Description gb:AK101383.1
DB_XREF= gi:32986592
TID=Os.26814.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036E24, full insert sequence.
FL= gb:AK101383.1 gb:AK071954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3772011/11zinc knuckle family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26814.2.S1_at--292--10811Chr12:23124288..23124312 (25 bp)
TTGTGCCCCTTACAACGCATTGCAG
LOC_Os12g37720
Os.26814.2.S1_at--814--9371Chr12:23124252..23124276 (25 bp)
TCGTGTGAAGATTACCCCGGGAACT
LOC_Os12g37720
Os.26814.2.S1_at--1072--9112Chr12:23124072..23124096 (25 bp)
TGCTGACGCCACAAACCGTGAGAAG
LOC_Os12g37720
Os.26814.2.S1_at--837--8991Chr12:23124040..23124064 (25 bp)
TGAAGGCATGCACGGACCCTGAATT
LOC_Os12g37720
Os.26814.2.S1_at--982--6671Chr12:23124014..23124038 (25 bp)
GTTGCTGCCATTGTAGGGAATGCCA
LOC_Os12g37720
Os.26814.2.S1_at--539--7611Chr12:23123999..23124023 (25 bp)
GGGAATGCCAAGATCACCGCACCTG
LOC_Os12g37720
Os.26814.2.S1_at--1089--6791Chr12:23123844..23123868 (25 bp)
GTTTTGGTATGTTGTCAGGCGCATT
LOC_Os12g37720
Os.26814.2.S1_at--168--1051Chr12:23123812..23123836 (25 bp)
AGGTGTCACATGGATTGGCCCTCAT
LOC_Os12g37720
Os.26814.2.S1_at--230--6611Chr12:23123800..23123824 (25 bp)
GATTGGCCCTCATTCTTGTAAAGTT
LOC_Os12g37720
Os.26814.2.S1_at--1125--6791Chr12:23123778..23123802 (25 bp)
GTTTAAACATCTCTTTGGCATTCAT
LOC_Os12g37720
Os.26814.2.S1_at--1124--1131Chr12:23123667..23123691 (25 bp)
AGTCCCCTTTTGGTGTGTCTTGTGA
LOC_Os12g37720
Target Sequence 
TTGTGCCCCTTACAACGCATTGCAGGCATACAAATATCGTGTGAAGATTACCCCGGGAACTGCAAAGAAAGGAAAAGCTG
CCAAAACTGCAATGAGTTTGTTCCTGCACACTGCTGACGCCACAAACCGTGAGAAGGAGCTAATGAAGGCATGCACGGAC
CCTGAATTGGTTGCTGCCATTGTAGGGAATGCCAAGATCACCGCACCTGGCCTCACTCAACTGAAGCAGAAGCAGAAACA
GAAGGGGAAAAAATCTGCAAAAGAAAACTAGTTCAAAGCTATCAGAGACCACCCCGTTTTGTCAAGAAAAGTATTTTTCT
CTGCAGAAACAATGCAAATGTTTTGGTATGTTGTCAGGCGCATTTGGATGGAGGTGTCACATGGATTGGCCCTCATTCTT
GTAAAGTTTAAACATCTCTTTGGCATTCATAGCCATAGGACAGGATATAATGTAAACAGATACGGCAGAACATTGGAACC
GATTGACAAGCTTCATACGCTTACAAAGGGACGCTGAGTCCCCTTTTGGTGTGTCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26814.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis