Browse Element(s) Details


Os.50330.1.S1_at

Description gb:AK120758.1
DB_XREF= gi:37990381
TID=Os.50330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007F02, full insert sequence.
FL= gb:AK120758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3775010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50330.1.S1_at--832--8931Chr12:23140708..23140732 (25 bp)
TGACGCCGAGTTTCCCTGTGGTGAG
LOC_Os12g37750
Os.50330.1.S1_at--624--3891Chr12:23140723..23140747 (25 bp)
CTGTGGTGAGCCTGGTTGATCTACA
LOC_Os12g37750
Os.50330.1.S1_at--948--8571Chr12:23140735..23140759 (25 bp)
TGGTTGATCTACATGCCATCTCCTT
LOC_Os12g37750
Os.50330.1.S1_at--603--9251Chr12:23140762..23140786 (25 bp)
TCCTCAAGGACGGTGACAATGGTCT
LOC_Os12g37750
Os.50330.1.S1_at--755--2232Chr12:23140777..23140801 (25 bp)
ACAATGGTCTCTACTGGTTGGTTGA
LOC_Os12g37750
Os.50330.1.S1_at--22--8191Chr12:23140893..23140917 (25 bp)
GGAAGCCTTTTGATGGCCATTACTT
LOC_Os12g37750
Os.50330.1.S1_at--38--10432Chr12:23140939..23140963 (25 bp)
TTATTTGCACGAGGATCCCATCCAG
LOC_Os12g37750
Os.50330.1.S1_at--162--9331NONE
TCCCATCCAGAGTCGGCAGTTGAGT
NONE
Os.50330.1.S1_at--696--1251Chr12:23141645..23142034 (25 bp)
AGATTGCACGTAAGCAACGCAGAGA
LOC_Os12g37750
Os.50330.1.S1_at--5--2311Chr12:23142066..23142090 (25 bp)
AAATGGATTGGAGGCAGTACCGAAT
LOC_Os12g37750
Os.50330.1.S1_at--936--10392Chr12:23142269..23142293 (25 bp)
TTTTGAAATTGGACTTTATGCCGGG
LOC_Os12g37750
Target Sequence 
TGACGCCGAGTTTCCCTGTGGTGAGCCTGGTTGATCTACATGCCATCTCCTTCCTCCTCAAGGACGGTGACAATGGTCTC
TACTGGTTGGTTGAGGTTGACATGAGAAACAAGGCCATGATTTCACCGGCCGCTCTCTACATCAATGAAGAAGAAGAGGA
AGATGCTGCGGTGACGACGAGATCTGGAAGCCTTTTGATGGCCATTACTTCATCCCCAGCTGGTTCACCTCTTATTTGCA
CGAGGATCCCATCCAGAGTCGGCAGTTGAGTCAAATGATGCAGAAGACAAAATATGAGAGAACAATGCATAAGATTGCAC
GTAAGCAACGCAGAGAAATGTTGAGACAAGACAGCGAAAATAAAAAAAAAATGGATTGGAGGCAGTACCGAATAGTGGGG
GACAAGGCAAAATGACGCAGGAGAGGAAACAAGAGAGGGCAACATTGCCCAAGAGATGAATGGAGGCAGGGTTGACAATT
TTGAAATTGGACTTTATGCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis