Browse Element(s) Details


Os.53693.1.S1_at

Description gb:AK073968.1
DB_XREF= gi:32983991
TID=Os.53693.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071N15, full insert sequence.
FL= gb:AK073968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3778011/11calmodulin-binding protein MPCBP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed
LOC_Os12g37790OsAffx.20004.1.S1_at10/1112+23171813..23172409hypothetical protein
LOC_Os12g37800OsAffx.7823.1.S1_at10/1112+23175407..23176842hypothetical protein
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53693.1.S1_at--658--1411Chr12:23163526..23163550 (25 bp)
AGACACAGGACGCACTGGCTGCATA
LOC_Os12g37780
Os.53693.1.S1_at--245--4771Chr12:23163509..23163533 (25 bp)
GCTGCATACTTCAATGCGGTCTCGA
LOC_Os12g37780
Os.53693.1.S1_at--860--4231Chr12:23163484..23163508 (25 bp)
CCGAGGTGGAGCACGTACCATCAAA
LOC_Os12g37780
Os.53693.1.S1_at--969--1711Chr12:23163468..23163492 (25 bp)
ACCATCAAAGGTATCCATCGGCGCC
LOC_Os12g37780
Os.53693.1.S1_at--686--2931Chr12:23163381..23163405 (25 bp)
AAGGCACGAGCCGACGAACCGGATG
LOC_Os12g37780
Os.53693.1.S1_at--858--1771Chr12:23163364..23163388 (25 bp)
ACCGGATGGCATGGTTCTACCTAGG
LOC_Os12g37780
Os.53693.1.S1_at--1011--8851Chr12:23163309..23163333 (25 bp)
TGATGCTGCTGACTGCTTCCAGGCA
LOC_Os12g37780
Os.53693.1.S1_at--716--9651Chr12:23163247..23163271 (25 bp)
TCAGATCACTCTGATGGCTCATCAT
LOC_Os12g37780
Os.53693.1.S1_at--468--7951Chr12:23163119..23163143 (25 bp)
GGATACCAGCTACATGTAACTTTTG
LOC_Os12g37780
Os.53693.1.S1_at--301--2051Chr12:23163101..23163125 (25 bp)
ACTTTTGTATCCGTAGGTGCCAGCG
LOC_Os12g37780
Os.53693.1.S1_at--476--5111Chr12:23162996..23163020 (25 bp)
GCACTAGAACTGTCGTACTGTACTG
LOC_Os12g37780
Target Sequence 
AGACACAGGACGCACTGGCTGCATACTTCAATGCGGTCTCGACCGAGGTGGAGCACGTACCATCAAAGGTATCCATCGGC
GCCCTCCTGTCCAAACAAGGCCCCAAGTATCTCCCCGTCGCAAGGAGCTTCCTCTCGGACGCCCTAAGGCACGAGCCGAC
GAACCGGATGGCATGGTTCTACCTAGGGAAGGTCCACAAGCATGATGGCAGGCTAGCTGATGCTGCTGACTGCTTCCAGG
CAGCCTCAATGCTTGAGGAATCAGACCCAATAGAAAGCTTCAGATCACTCTGATGGCTCATCATCTTACTGCANCAACAT
TGAGGTTTTCTTTTTTCGCGGGTTAATTTTTCTTCTCTCCTCTTCTTCTCCTCCTANCTTTTTTTGGTACATAGCTGGGT
GGAATCTGGATACCAGCTACATGTAACTTTTGTATCCGTAGGTGCCAGCGTGCTCGTCACGCTGNTGTCGGATATTTTGA
CAAAATGATGTAATTTGGCTGCTNAATGGTAATAGCCGTATATATAAGNTGCACTAGAACTGTCGTACTGTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis