Browse Element(s) Details


OsAffx.20004.1.S1_at

Description tigr:9640.m03672
TID=OsAffx.20004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3779010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed
LOC_Os12g37790OsAffx.20004.1.S1_at10/1112+23171813..23172409hypothetical protein
LOC_Os12g37800OsAffx.7823.1.S1_at10/1112+23175407..23176842hypothetical protein
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g37820Os.7307.3.S1_x_at2/1112+23193598..23194689retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20004.1.S1_at--337--5771Chr12:23171870..23171894 (25 bp)
GACGAGGCCATCAATCATGCCTTTA
LOC_Os12g37790
OsAffx.20004.1.S1_at--575--9612Chr12:23171884..23171908 (25 bp)
TCATGCCTTTAATCGCCTTGAATCG
LOC_Os12g37790
OsAffx.20004.1.S1_at--519--10491Chr12:23171892..23171916 (25 bp)
TTAATCGCCTTGAATCGTCGCCTCT
LOC_Os12g37790
OsAffx.20004.1.S1_at--632--8991Chr12:23171902..23171926 (25 bp)
TGAATCGTCGCCTCTTCATGCCCAG
LOC_Os12g37790
OsAffx.20004.1.S1_at--697--7311Chr12:23171989..23172011 (23 bp)
GTGCTCTGCGAGTCGCTCTGGTGAC
LOC_Os12g37790
OsAffx.20004.1.S1_at--293--8471Chr12:23172285..23172309 (25 bp)
TGGCCGTCGGGCTAGTGCTGCACCA
LOC_Os12g37790
OsAffx.20004.1.S1_at--972--5451Chr12:23172325..23172349 (25 bp)
GAACGGCCGGATTCGGTTCATGCAG
LOC_Os12g37790
OsAffx.20004.1.S1_at--140--6571Chr12:23172334..23172358 (25 bp)
GATTCGGTTCATGCAGGCGTGGTCC
LOC_Os12g37790
OsAffx.20004.1.S1_at--628--11Chr12:23172364..23172388 (25 bp)
AGTGGCCGACGCAGTGGAAAACCCG
LOC_Os12g37790
OsAffx.20004.1.S1_at--890--8131Chr12:23172379..23172403 (25 bp)
GGAAAACCCGGAGGCGATACTGCAC
LOC_Os12g37790
OsAffx.20004.1.S1_at--22--3971Chr12:23172387..23172411 (25 bp)
CGGAGGCGATACTGCACAACTGAGT
NONE
Target Sequence 
GACGAGGCCATCAATCATGCCTTTAATCGCCTTGAATCGTCGCCTCTTCATGCCCAGTCCGCCAAGTGCTTCTCTTCCGC
TCCTCCCCTGCCGCCGGCGCAGGCGCCGCGCCTTTCTCGGTGCTCTGCGAGTCGCTCTGGTGACGGAGTTGGCGTGCGGC
GGAGTGGCCGTCGGGCTAGTGCTGCACCACGCGGCGACGGATGGGAACGGCCGGATTCGGTTCATGCAGGCGTGGTCCGC
GGCAGTGGCCGACGCAGTGGAAAACCCGGAGGCGATACTGCACAACTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis