Browse Element(s) Details


OsAffx.7823.1.S1_at

Description tigr:9640.m03673
TID=OsAffx.7823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3780010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed
LOC_Os12g37790OsAffx.20004.1.S1_at10/1112+23171813..23172409hypothetical protein
LOC_Os12g37800OsAffx.7823.1.S1_at10/1112+23175407..23176842hypothetical protein
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g37820Os.7307.3.S1_x_at2/1112+23193598..23194689retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7823.1.S1_at--381--7951Chr12:23175454..23175478 (25 bp)
GGATCTAGCCGTGAGGACCCGCCAT
LOC_Os12g37800
OsAffx.7823.1.S1_at--494--4171NONE
CGCCATTGCTCAGATGGTTTCTATT
NONE
OsAffx.7823.1.S1_at--610--6253Chr12:23176335..23176359 (25 bp)
GATGGTTTCTATTCGTATGTGATGC
LOC_Os12g37800
OsAffx.7823.1.S1_at--1077--6333Chr12:23176355..23176379 (25 bp)
GATGCTATTGTGTGCTGATGTGAGT
LOC_Os12g37800
OsAffx.7823.1.S1_at--712--7112Chr12:23176509..23176533 (25 bp)
GTCATGGATATCACGTGGGATGCTC
LOC_Os12g37800
OsAffx.7823.1.S1_at--9--1271Chr12:23176563..23176587 (25 bp)
AGATTTTCATATAGCATGTGCGTAT
LOC_Os12g37800
OsAffx.7823.1.S1_at--711--10271Chr12:23176661..23176706 (25 bp)
TTTCCTTGTTTGGAGTCCTAGTTCT
LOC_Os12g37800
OsAffx.7823.1.S1_at--425--9238Chr12:23176697..23176721 (25 bp)
TCCTAGTTCTAGTTGGATTCGTGGC
LOC_Os12g37800
OsAffx.7823.1.S1_at--657--8491Chr12:23176718..23176742 (25 bp)
TGGCTATCGACAGCCACATTCTGGC
LOC_Os12g37800
OsAffx.7823.1.S1_at--1026--2071Chr12:23176733..23176757 (25 bp)
ACATTCTGGCTATGGGCAGCCACAT
LOC_Os12g37800
OsAffx.7823.1.S1_at--997--7591Chr12:23176746..23176770 (25 bp)
GGGCAGCCACATTCTGGGTACAAAT
LOC_Os12g37800
Target Sequence 
GGATCTAGCCGTGAGGACCCGCCATTGCTCAGATGGTTTCTATTCGTATGTGATGCTATTGTGTGCTGATGTGAGTCAGG
CTTGGGAGAAGTTGAGGTCCAGATGGTCATGGATATCACGTGGGATGCTCAGGCTAGAGAACAATGCACGTGGTGGTAAA
GATTTTCATATAGCATGTGCGTATGGAAAGAGTAGTCAAATTTGGACTGGAGTCCAGGTTTGGAAAGATTGGAGTGTGGA
GTTGTATGGGGATGTTGTTTCCTTGTTTGGAGTCCTAGTTCTAGTTGGATTCGTGGCTATCGACAGCCACATTCTGGCTA
TGGGCAGCCACATTCTGGGTACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis