Browse Element(s) Details


OsAffx.32073.1.S1_at

Description tigr:9640.m03670
TID=OsAffx.32073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3777011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed
LOC_Os12g37790OsAffx.20004.1.S1_at10/1112+23171813..23172409hypothetical protein
LOC_Os12g37800OsAffx.7823.1.S1_at10/1112+23175407..23176842hypothetical protein
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32073.1.S1_at--805--3311Chr12:23161870..23161894 (25 bp)
CACATCTCCTCCAGAAGTTTCAGAT
LOC_Os12g37770
OsAffx.32073.1.S1_at--748--4991Chr12:23161897..23161921 (25 bp)
GCATGTGCTACTACTTCCCAAGAAT
LOC_Os12g37770
OsAffx.32073.1.S1_at--159--9331Chr12:23161921..23161945 (25 bp)
TCCCAGTTTGGATTGCATCACTTGA
LOC_Os12g37770
OsAffx.32073.1.S1_at--887--10511Chr12:23161942..23161966 (25 bp)
TTGAAAACCTCACCTACCTAGATAT
LOC_Os12g37770
OsAffx.32073.1.S1_at--169--8551Chr12:23161996..23162020 (25 bp)
TGGAGATCCTCGGAAACTTACCCGC
LOC_Os12g37770
OsAffx.32073.1.S1_at--95--2391Chr12:23162009..23162033 (25 bp)
AAACTTACCCGCATTGCTGTTTCTC
LOC_Os12g37770
OsAffx.32073.1.S1_at--970--3911Chr12:23162033..23162057 (25 bp)
CTGGCTGACGTCGAAATCGGCTGAT
LOC_Os12g37770
OsAffx.32073.1.S1_at--103--2931Chr12:23162103..23162127 (25 bp)
AAGGAACTCTACTTCACCTGCTGGA
LOC_Os12g37770
OsAffx.32073.1.S1_at--1028--8891Chr12:23162174..23162198 (25 bp)
TGAGAAGCTGCATCTTCCATTCCAT
LOC_Os12g37770
OsAffx.32073.1.S1_at--24--10651Chr12:23162237..23162261 (25 bp)
TTCCCTTAGGCTGCTTGTTGTTGAG
LOC_Os12g37770
OsAffx.32073.1.S1_at--183--4091Chr12:23162278..23162302 (25 bp)
CGACGATTCGGCAGGTGGAGTCATT
LOC_Os12g37770
Target Sequence 
CACATCTCCTCCAGAAGTTTCAGATGGGCATGTGCTACTACTTCCCAAGAATCCCAGTTTGGATTGCATCACTTGAAAAC
CTCACCTACCTAGATATCAATCTTAATCCAGTAAAAGAGGAAGTATTGGAGATCCTCGGAAACTTACCCGCATTGCTGTT
TCTCTGGCTGACGTCGAAATCGGCTGATCCAAAACAAAGACTCATCATAAACAGCAACATGTTCATGTGCCTGAAGGAAC
TCTACTTCACCTGCTGGAGCATTGAGTCAGGGTTGATGTTTCAAGAAGGCTGTATGGCAAAGCTTGAGAAGCTGCATCTT
CCATTCCATGCTGCCACTGCCCTTGAATTTGGCATCCATCACCTCTCTTCCCTTAGGCTGCTTGTTGTTGAGATCATCTG
CAGCGGCGCGACGATTCGGCAGGTGGAGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis