Browse Element(s) Details


Os.26814.1.S1_x_at

Description gb:AK059209.1
DB_XREF= gi:32969227
TID=Os.26814.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B08, full insert sequence.
FL= gb:AK059209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3772011/11zinc knuckle family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26814.1.S1_x_at--694--831Chr12:23129267..23129291 (25 bp)
ATGGAGTGCCGGTTACTGATAAATC
LOC_Os12g37720
Os.26814.1.S1_x_at--301--5391Chr12:23129121..23129145 (25 bp)
GAAGCATTGGCTTATGGGCCTGCAT
LOC_Os12g37720
Os.26814.1.S1_x_at--619--8651Chr12:23129107..23129131 (25 bp)
TGGGCCTGCATTAGCTGAGCATATC
LOC_Os12g37720
Os.26814.1.S1_x_at--956--611Chr12:23129075..23129099 (25 bp)
ATGCTGGATTGCTTCCAAGTACAAA
LOC_Os12g37720
Os.26814.1.S1_x_at--855--6291Chr12:23129022..23129046 (25 bp)
GATGATCACACTATTCAGTCCCTAG
LOC_Os12g37720
Os.26814.1.S1_x_at--1160--3411Chr12:23129007..23129031 (25 bp)
CAGTCCCTAGTAGAATCCATTTCAA
LOC_Os12g37720
Os.26814.1.S1_x_at--376--1011Chr12:23128976..23129000 (25 bp)
AGGATTGGCTTGTAGATGTCATGTC
LOC_Os12g37720
Os.26814.1.S1_x_at--725--7091Chr12:23128959..23128983 (25 bp)
GTCATGTCTGGTCAAAGGATCCCTG
LOC_Os12g37720
Os.26814.1.S1_x_at--101--231Chr12:23128678..23128702 (25 bp)
ATATTGCCCTGTCCTGTTGAATCAA
LOC_Os12g37720
Os.26814.1.S1_x_at--343--5991Chr12:23128626..23128650 (25 bp)
GAGACATTTGATGCTGCTCTAGATG
LOC_Os12g37720
Os.26814.1.S1_x_at--108--8131Chr12:23128546..23128570 (25 bp)
GGACTCAGCGGCACAAAGGCTTAAT
LOC_Os12g37720
Target Sequence 
ATGGAGTGCCGGTTACTGATAAATCTGAAGAACCATCTACAACAACAGGAAAGAAGTCAGCTTCAAAAAACAAGCAGTCA
AGTTCAAATGCAAAAGCTAGTAATAATGCTCCATCAAATAAATCAACTCTAAAGACACTTCTTGGGGAAGCATTGGCTTA
TGGGCCTGCATTAGCTGAGCATATCATATTGGATGCTGGATTGCTTCCAAGTACAAAGGTTGGGAAAGACCCAGAGAGCA
GTATTGATGATCACACTATTCAGTCCCTAGTAGAATCCATTTCAAAGTTTGAGGATTGGCTTGTAGATGTCATGTCTGGT
CAAAGGATCCCTGAGGGGTACATCCTCATGCAGAATAAGGCGGCTGCAAAGAAGAACCTCACACCTTTGGAGGGGTCTAG
TGCTAGTCAGAAGATATATGATGAATATTGCCCTGTCCTGTTGAATCAATTTAAGTCAAGGGAATTCAATGAATTTGAGA
CATTTGATGCTGCTCTAGATGAGTTCTACAGCAAAATAGAGAGTCAAAGGGTGAATCAACAGCAAAAATCAAAAGAGGAC
TCAGCGGCACAAAGGCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26814.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis