Browse Element(s) Details


Os.27404.1.A1_at

Description gb:AK100149.1
DB_XREF= gi:32985358
TID=Os.27404.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015A14, full insert sequence.
FL= gb:AK100149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3757011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.27404.1.A1_at--99--3811Chr12:23034372..23034396 (25 bp)
CTCCTGAATCCTCTTGGCCTGAAGT
LOC_Os12g37570
Os.27404.1.A1_at--202--3851Chr12:23034402..23034426 (25 bp)
CTGCAGCTTCGGAATTCTGACCAAG
LOC_Os12g37570
Os.27404.1.A1_at--110--1191Chr12:23034433..23034457 (25 bp)
AGTACTGGAGCTGAGGCTGGCACTT
LOC_Os12g37570
Os.27404.1.A1_at--484--7771Chr12:23034460..23034484 (25 bp)
GGTGAATTCTTCCATGACAACTCCA
LOC_Os12g37570
Os.27404.1.A1_at--673--5611Chr12:23034475..23034499 (25 bp)
GACAACTCCAATTTATGCCTAGTCG
LOC_Os12g37570
Os.27404.1.A1_at--1063--1691Chr12:23034507..23034531 (25 bp)
ACCAAGCTCGACTCTGTAACGCGAA
LOC_Os12g37570
Os.27404.1.A1_at--85--2611Chr12:23034524..23034548 (25 bp)
AACGCGAAGGCGACAATGATCTTGT
LOC_Os12g37570
Os.27404.1.A1_at--77--6611Chr12:23034552..23034576 (25 bp)
GATTGTTCTGACGATCGACAACCAA
LOC_Os12g37570
Os.27404.1.A1_at--488--6871Chr12:23034580..23034604 (25 bp)
GTATTCGAGTTGCTGATCCTGATTA
LOC_Os12g37570
Os.27404.1.A1_at--527--10511Chr12:23034637..23034661 (25 bp)
TTCAACCTGTTCTTTTGTTCTGCTC
LOC_Os12g37570
Os.27404.1.A1_at--510--10451Chr12:23034694..23034718 (25 bp)
TTAGAATCCCATCAGAACCCAATCA
LOC_Os12g37570
Target Sequence
CTCCTGAATCCTCTTGGCCTGAAGTTCCACCTGCAGCTTCGGAATTCTGACCAAGGTAGAGAGTACTGGAGCTGAGGCTG
GCACTTTTGGTGAATTCTTCCATGACAACTCCAATTTATGCCTAGTCGAATGTCGACCAAGCTCGACTCTGTAACGCGAA
GGCGACAATGATCTTGTGTAGATTGTTCTGACGATCGACAACCAAATTGTATTCGAGTTGCTGATCCTGATTATGCATGA
AAGTTGCACCATCAACATTGTAAGGTTCAACCTGTTCTTTTGTTCTGCTCTGATTCCTTCTNNGTTACTGTAACCATGTT
GTTTAGAATCCCATCAGAACCCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27404.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis