Browse Element(s) Details


Os.8208.1.S1_at

Description gb:AY098743.2
DB_XREF= gi:34495243
TID=Os.8208.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8208 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) globulin-like protein mRNA, complete cds.
PROD=globulin-like protein
FL= gb:AK121667.1 gb:AY098743.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5796011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8208.1.S1_at--1122--2791Chr03:32961597..32961621 (25 bp)
AAGTTGGTACACGTAGGCCACGCGT
LOC_Os03g57960
Os.8208.1.S1_at--568--4411Chr03:32961613..32961637 (25 bp)
GCCACGCGTCGTGTACAGTACAAAA
LOC_Os03g57960
Os.8208.1.S1_at--828--3091Chr03:32961636..32961660 (25 bp)
AATACGGTACCGTACTGCGTGTACG
LOC_Os03g57960
Os.8208.1.S1_at--792--9891Chr03:32961648..32961672 (25 bp)
TACTGCGTGTACGTGTAGCCAAGGG
LOC_Os03g57960
Os.8208.1.S1_at--631--7631Chr03:32961671..32961695 (25 bp)
GGGACGTACGCTTTATGTATATATC
LOC_Os03g57960
Os.8208.1.S1_at--929--9791Chr03:32961708..32961732 (25 bp)
TAACGTATGCGTATTAGCTGAGGTA
LOC_Os03g57960
Os.8208.1.S1_at--1157--6211Chr03:32961739..32961763 (25 bp)
GATGGAACTGTATGAACCCAAGTAC
LOC_Os03g57960
Os.8208.1.S1_at--735--2591Chr03:32961753..32961777 (25 bp)
AACCCAAGTACGGAGTGCTATATTA
LOC_Os03g57960
Os.8208.1.S1_at--914--6991Chr03:32961788..32961812 (25 bp)
GTACGTTCTGCTACTAATTAACCTG
LOC_Os03g57960
Os.8208.1.S1_at--875--3131Chr03:32961803..32961827 (25 bp)
AATTAACCTGCGTCGTTTGGGCAAG
LOC_Os03g57960
Os.8208.1.S1_at--442--4691Chr03:32961855..32961879 (25 bp)
GCGGAGTCGTACATAATCGCGAACC
LOC_Os03g57960
Target Sequence 
AAGTTGGTACACGTAGGCCACGCGTCGTGTACAGTACAAAATACGGTACCGTACTGCGTGTACGTGTAGCCAAGGGGACG
TACGCTTTATGTATATATCGTATCTATGTATTAACGTATGCGTATTAGCTGAGGTATGTATCGATGGAACTGTATGAACC
CAAGTACGGAGTGCTATATTACTAATGCAGAGTACGTTCTGCTACTAATTAACCTGCGTCGTTTGGGCAAGTTTGATTTG
TAATTAAATTACTCATAAGCGGAGTCGTACATAATCGCGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis