Browse Element(s) Details


Os.8269.1.A1_at

Description gb:CB659617
DB_XREF= gi:29663342
DB_XREF=OSJNEc16L24.r
CLONE=OSJNEc16L24
TID=Os.8269.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8269 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187122.1 (A.thaliana) ankyrin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2915011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29170OsAffx.31801.4.S1_at10/112+17288054..17290035hypothetical protein
LOC_Os02g29180NANA2+17294959..17295477hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8269.1.A1_at--400--3211Chr02:17265665..17265689 (25 bp)
CAAGGCGTCTCACTTTTTGCAAAGA
LOC_Os02g29150
Os.8269.1.A1_at--246--4651Chr02:17265661..17265685 (25 bp)
GCGTCTCACTTTTTGCAAAGAGCCT
LOC_Os02g29150
Os.8269.1.A1_at--1070--10251Chr02:17265650..17265674 (25 bp)
TTTGCAAAGAGCCTCTGGTTCCCTG
LOC_Os02g29150
Os.8269.1.A1_at--254--4031Chr02:17265589..17265613 (25 bp)
CGATACCCAGAACCAGAATGGTTTA
LOC_Os02g29150
Os.8269.1.A1_at--292--4351Chr02:17265577..17265601 (25 bp)
CCAGAATGGTTTATCTCCTTTTTAT
LOC_Os02g29150
Os.8269.1.A1_at--803--451Chr02:17265565..17265589 (25 bp)
ATCTCCTTTTTATAATTGAAGCAAA
LOC_Os02g29150
Os.8269.1.A1_at--692--671Chr02:17265517..17265541 (25 bp)
ATGAACATCACGGTGATTCGTGTCT
LOC_Os02g29150
Os.8269.1.A1_at--1123--1911Chr02:17265508..17265532 (25 bp)
ACGGTGATTCGTGTCTATAACTGCT
LOC_Os02g29150
Os.8269.1.A1_at--1055--6571Chr02:17265503..17265527 (25 bp)
GATTCGTGTCTATAACTGCTGTTTG
LOC_Os02g29150
Os.8269.1.A1_at--831--2031Chr02:17265399..17265423 (25 bp)
ACTATTTGTCACTCATATCTCAATG
LOC_Os02g29150
Os.8269.1.A1_at--299--8672Chr04:16411403..16411908 (25 bp)
TGTGGATCCACATGTATCTATGACA
NONE
Target Sequence 
CAAGGCGTCTCACTTTTTGCAAAGAGCCTCTGGTTCCCTGAGTCCACAGATGTTCTCACATTTTGCCTGGAGACTTCGAT
ACCCAGAACCAGAATGGTTTATCTCCTTTTTATAATTGAAGCAAAGTAGCTAACCGGGGTGGTGACTGATGAACATCACG
GTGATTCGTGTCTATAACTGCTGTTTGGGGTGGCAGTGTGTGCAATGCTGCATTGGGATGGCATAGTGGGGGTTTAACTA
TTTGCCACTTTTAGATTTGGCAAATAACTATTTGTCACTCATATCTCAATGACATGTGGATCCACATGTATCTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8269.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis