Browse Element(s) Details


Os.8331.1.S1_at

Description gb:AK060161.1
DB_XREF= gi:32970179
TID=Os.8331.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.8331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H10, full insert sequence.
FL= gb:AK060161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3595011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os02g35950Os.8331.1.S1_at11/112+21590776..21596641RNA recognition motif family protein, expressed
LOC_Os02g35960OsAffx.2876.1.S1_at10/112+21599686..21601352hypothetical protein
LOC_Os02g35970NANA2+21602296..21607403transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g35980NANA2+21612438..21612902hypothetical protein
LOC_Os02g36000OsAffx.24591.1.S1_at11/112+21619153..21619856hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8331.1.S1_at--819--1191Chr02:21593106..21593130 (25 bp)
AGTATGGTGATCTTGCCTCTGTTAA
LOC_Os02g35950
Os.8331.1.S1_at--233--4271Chr02:21593121..21593145 (25 bp)
CCTCTGTTAAAATTCCTGTTGGCAA
LOC_Os02g35950
Os.8331.1.S1_at--890--5551Chr02:21593350..21593374 (25 bp)
GAAAGCAGGCAGTGCGTCTTTCCTG
LOC_Os02g35950
Os.8331.1.S1_at--911--5011Chr02:21593380..21593517 (25 bp)
GCAGTCCAGCAAGCAAACAGTCTAG
LOC_Os02g35950
Os.8331.1.S1_at--534--8391Chr02:21596117..21596141 (25 bp)
GGCGCAATGGCATGTACTACGGTAC
LOC_Os02g35950
Os.8331.1.S1_at--1117--9911Chr02:21596134..21596158 (25 bp)
TACGGTACACCTTTCTACGGTGGAT
LOC_Os02g35950
Os.8331.1.S1_at--625--8571Chr02:21596154..21596178 (25 bp)
TGGATATGGCTATGCGTCGCCACTT
LOC_Os02g35950
Os.8331.1.S1_at--275--10691Chr02:21596177..21596201 (25 bp)
TTCCACACCCAAACATGTATGCAGC
LOC_Os02g35950
Os.8331.1.S1_at--887--10471Chr02:21596220..21596244 (25 bp)
TTACTACGGTAACCAGCAGCTTGTG
LOC_Os02g35950
Os.8331.1.S1_at--316--10591Chr02:21596259..21596283 (25 bp)
TTCTCTCTTGTTTCCTCCAATGGAA
LOC_Os02g35950
Os.8331.1.S1_at--92--2591Chr02:21596284..21596308 (25 bp)
AACGAGGTTTTGGTCCAGTAAGCAT
LOC_Os02g35950
Target Sequence 
AGTATGGTGATCTTGCCTCTGTTAAAATTCCTGTTGGCAAACAGTGTGGTTTTGTTCAATTTGTCAACAGACCTGATGCA
GAAGAAGCACTGCAAGGGTTGAATGGATCAACAATTGGAAAGCAGGCAGTGCGTCTTTCCTGGGGCCGCAGTCCAGCAAG
CAAACAGTCTAGGGGTGATTCCGGCCACCGGCGCAATGGCATGTACTACGGTACACCTTTCTACGGTGGATATGGCTATG
CGTCGCCACTTCCACACCCAAACATGTATGCAGCAGCATATGGAGCCTACCCTTACTACGGTAACCAGCAGCTTGTGAGT
TGATGAGAGGCTTCTCTCTTGTTTCCTCCAATGGAAAACGAGGTTTTGGTCCAGTAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis