Browse Element(s) Details


Os.8355.1.S1_a_at

Description gb:AK073320.1
DB_XREF= gi:32983343
TID=Os.8355.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative carboxypeptidase D (P0460C04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029C16, full insert sequence.
FL= gb:AK073320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6169011/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650Os.28943.1.S1_x_at2/111+35996748..35999884retrotransposon protein, putative, unclassified
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8355.1.S1_a_at--928--9911Chr01:36015699..36015723 (25 bp)
TACTGGGCAGATTCCCCGAAATCTA
LOC_Os01g61690
Os.8355.1.S1_a_at--391--4211Chr01:36015684..36015708 (25 bp)
CCGAAATCTATGCTTCCTATCTACC
LOC_Os01g61690
Os.8355.1.S1_a_at--632--3431Chr01:36015462..36015486 (25 bp)
CAGATGCTGTAGTTCCTGTTACTGC
LOC_Os01g61690
Os.8355.1.S1_a_at--770--10451Chr01:36015248..36015272 (25 bp)
TTAACTCTCGTCACTATAGCAGGCG
LOC_Os01g61690
Os.8355.1.S1_a_at--792--4571Chr01:36015226..36015250 (25 bp)
GCGCAGGCCATGAGGTACCACTACA
LOC_Os01g61690
Os.8355.1.S1_a_at--468--8431Chr01:36015199..36015223 (25 bp)
GGCCTCGAGAAGCACTTATATTATT
LOC_Os01g61690
Os.8355.1.S1_a_at--267--5631Chr01:36015172..36015196 (25 bp)
GACACTTCTTGCAGAATACACCCAT
LOC_Os01g61690
Os.8355.1.S1_a_at--859--5231Chr01:36015159..36015183 (25 bp)
GAATACACCCATGCCAACTCAATAG
LOC_Os01g61690
Os.8355.1.S1_a_at--812--5551Chr01:36014986..36015010 (25 bp)
GAAACCTGACAATTGTACTGCTCCA
LOC_Os01g61690
Os.8355.1.S1_a_at--66--7011Chr01:36014972..36014996 (25 bp)
GTACTGCTCCAGCTAAAGAGCTCCT
LOC_Os01g61690
Os.8355.1.S1_a_at--988--2331Chr01:36014958..36014982 (25 bp)
AAAGAGCTCCTTTGTATATGATACT
LOC_Os01g61690
Target Sequence 
TACTGGGCAGATTCCCCGAAATCTATGCTTCCTATCTACCAAGAATTGATTGCAGCTGGTATCAGGATATGGGTTTTCAG
TGGGGATACAGATGCTGTAGTTCCTGTTACTGCNAACANGGTACTCAATAGATGCTCTTAAGCNTCCAACTATGGTNCAA
TTGGTACCCNTTGGTATGACCNACGGAAAGGTTGGAGGTTGGAGTCNAAGTGTATAAANGGNTTAACTCTCGTCACTATA
GCAGGCGCAGGCCATGAGGTACCACTACACCGGCCTCGAGAAGCACTTATATTATTCAGACACTTCTTGCAGAATACACC
CATGCCAACTCAATAGCCACTTGAAGCAGAATGATAGAGTAAACTACGACAATCATATAAAGTGCTAAAGTGTTTTTACA
TTATTTTTTAATTTGATTTGATTATTACAACATGATATCAACTATCTCTACTAAATGTATGTATGTTTCTTACTAGCTAG
TAGGGAAACCTGACAATTGTACTGCTCCAGCTAAAGAGCTCCTTTGTATATGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8355.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis