Browse Element(s) Details


Os.8408.1.S1_at

Description gb:AK066213.1
DB_XREF= gi:32976231
TID=Os.8408.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.8408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056E08, full insert sequence.
FL= gb:AK062204.1 gb:AK066213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1315011/11Pollen-specific protein SF21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed
LOC_Os02g13160Os.19456.1.S1_x_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.19456.1.S1_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.3246.2.S1_at2/112+7012780..7014847F-box family protein, putative
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed
LOC_Os02g13180NANA2+7024790..7025386Skp1 family, dimerisation domain containing protein, expressed
LOC_Os02g13190OsAffx.19451.3.S1_s_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.19451.3.S1_x_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.24480.1.S1_x_at1/112+7026620..7028304expressed protein
LOC_Os02g13200Os.5171.1.S1_at10/112+7032348..7034839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8408.1.S1_at--565--7171Chr02:7009832..7009856 (25 bp)
GTCGGCGAGTACTCTCAGTTCCATA
LOC_Os02g13150
Os.8408.1.S1_at--1069--9911Chr02:7009855..7009879 (25 bp)
TACTGAGGCTGTTCACATGACATCA
LOC_Os02g13150
Os.8408.1.S1_at--688--7271Chr02:7010003..7010027 (25 bp)
GTCCAAGCATGTGGGTCGCTCATAA
LOC_Os02g13150
Os.8408.1.S1_at--421--331Chr02:7010024..7010048 (25 bp)
ATAACGGAGGAGCAACCACACGCGA
LOC_Os02g13150
Os.8408.1.S1_at--144--1831Chr02:7010043..7010067 (25 bp)
ACGCGATGCTTATACCCATGGAGTA
LOC_Os02g13150
Os.8408.1.S1_at--832--6071Chr02:7010063..7010087 (25 bp)
GAGTACTTCTTCATGGGTTATGGCC
LOC_Os02g13150
Os.8408.1.S1_at--208--7631Chr02:7010077..7010101 (25 bp)
GGGTTATGGCCTGTACAGACCAAGC
LOC_Os02g13150
Os.8408.1.S1_at--823--2651Chr02:7010098..7010122 (25 bp)
AAGCCAGTTGGACTGTAGCCCGCGC
LOC_Os02g13150
Os.8408.1.S1_at--412--111Chr02:7010137..7010161 (25 bp)
ATTCTGTATATCACCCGATCTCCTG
LOC_Os02g13150
Os.8408.1.S1_at--436--6411Chr02:7010153..7010177 (25 bp)
GATCTCCTGTCACCCGAAAGCATGG
LOC_Os02g13150
Os.8408.1.S1_at--341--10091Chr02:7010290..7010314 (25 bp)
TAGGCTAACCTGATGGTCGGTTTAC
LOC_Os02g13150
Target Sequence 
GTCGGCGAGTACTCTCAGTTCCATACTGAGGCTGTTCACATGACATCAAAGCTGGACAGGAGATACTGTGCTCTAGTTGA
GGTCCAAGCATGTGGGTCGCTCATAACGGAGGAGCAACCACACGCGATGCTTATACCCATGGAGTACTTCTTCATGGGTT
ATGGCCTGTACAGACCAAGCCAGTTGGACTGTAGCCCGCGCAGCCCCCTCAGCCCATTCTGTATATCACCCGATCTCCTG
TCACCCGAAAGCATGGGAGTAAAACTAAAGCCAATCAAGACAAGAGTCAGGCTTGAAGTGTAGCATAGCACACAGGTAAA
TAAGGGTGGTGCAGAGGGGTGTCGCTTAGGGCTGACATGGTGTGAGTTTAGGCTAACCTGATGGTCGGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis