Browse Element(s) Details


Os.8412.1.S1_at

Description gb:AK102053.1
DB_XREF= gi:32987262
TID=Os.8412.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082C14, full insert sequence.
FL= gb:AK102053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0416911/11ATP phosphoribosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class
LOC_Os03g04169Os.8412.1.S1_at11/113+1888312..1898505ATP phosphoribosyltransferase family protein, expressed
LOC_Os03g04190OsAffx.3126.1.S1_at11/113+1899154..1901007Cytochrome P450 78A3, putative
LOC_Os03g04210OsAffx.3127.1.S1_at11/113+1915380..1916381IQ calmodulin-binding motif family protein, expressed
LOC_Os03g04220Os.14372.1.S1_at11/113+1917326..1918802Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000105biological_processhistidine biosynthesis
GO:0003879molecular_functionATP phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8412.1.S1_at--265--6071Chr03:1897182..1897206 (25 bp)
GAGTTCTCAGCCAAACATCGTTATG
LOC_Os03g04169
Os.8412.1.S1_at--1106--1151Chr03:1897610..1897634 (25 bp)
AGTCTACCGCTCACGTGATGGGAAG
LOC_Os03g04169
Os.8412.1.S1_at--343--6231Chr03:1898121..1898145 (25 bp)
GATGGCGCAAACTACTTTCGGAGCT
LOC_Os03g04169
Os.8412.1.S1_at--490--2851Chr03:1898165..1898189 (25 bp)
AAGTCTGCCATACTTCTCTGTCAAT
LOC_Os03g04169
Os.8412.1.S1_at--774--3871Chr03:1898182..1898206 (25 bp)
CTGTCAATGACCCTTTTAGCATCGG
LOC_Os03g04169
Os.8412.1.S1_at--166--1591Chr03:1898252..1898276 (25 bp)
AGCTCTCGTTTGAAGTGTCTGCGGT
LOC_Os03g04169
Os.8412.1.S1_at--899--3131Chr03:1898292..1898316 (25 bp)
AATTTTGGTCTGTGCCATCGTACAT
LOC_Os03g04169
Os.8412.1.S1_at--661--511Chr03:1898308..1898332 (25 bp)
ATCGTACATTGTGCTCGTCTAGTTA
LOC_Os03g04169
Os.8412.1.S1_at--141--5511Chr03:1898356..1898380 (25 bp)
GAAATACCCTTTATGTACCTGTTGA
LOC_Os03g04169
Os.8412.1.S1_at--889--8891Chr03:1898389..1898413 (25 bp)
TGAGACCTTATTGCCTTGTTGGATA
LOC_Os03g04169
Os.8412.1.S1_at--1126--3151Chr03:1898426..1898450 (25 bp)
AATTGTACCTTTTCTTGCGTGACGC
LOC_Os03g04169
Target Sequence 
GAGTTCTCAGCCAAACATCGTTATGTGGATTACAGGGCCCAACCATAAGTCCAGTCTACCGCTCACGTGATGGGAAGGTT
GCTGTGGAATATTATGCGATTAATGTAGTAGTTCCACAGAAGTCTCTTTACAAGTCCATTCAACAGCTGAGATCTATTGG
TGGCAGTGGAGTCTTGGTGACAAAGCTGACCTACATATTTGATGAGGAAACTCCTAGATGGCGCAAACTACTTTCGGAGC
TGGGGTTGTGACTTGGTGTGAAGTCTGCCATACTTCTCTGTCAATGACCCTTTTAGCATCGGTTTACTTATGCTCGCTGA
AGTATACTACAACCATAATCAGAAATGAGCTCTCGTTTGAAGTGTCTGCGGTGCTTATTTGAGAGGAAATTTTGGTCTGT
GCCATCGTACATTGTGCTCGTCTAGTTATACCTTTGACAAGCATATGGGTTGAAATACCCTTTATGTACCTGTTGATATA
ATTGTGAGACCTTATTGCCTTGTTGGATAGGTGTGCGTATGAATTGTACCTTTTCTTGCGTGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis