Browse Element(s) Details


Os.8434.1.S1_at

Description gb:AK102215.1
DB_XREF= gi:32987424
TID=Os.8434.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.23 (P0490D09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087K21, full insert sequence.
FL= gb:AK102215.1 gb:AK102916.1 gb:AK120210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed
LOC_Os01g56810Os.33309.1.S1_at9/111+33115336..33119595Cytokinin dehydrogenase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8434.1.S1_at--230--4711Chr01:33099795..33099819 (25 bp)
GCTGGTAGTAAATAACACGCACAAC
LOC_Os01g56790
Os.8434.1.S1_at--509--3091Chr01:33099805..33099829 (25 bp)
AATAACACGCACAACTTCTTTTTAG
LOC_Os01g56790
Os.8434.1.S1_at--1105--10791Chr01:33099847..33099871 (25 bp)
TTGTATAGCAGATACCCATCCATCT
LOC_Os01g56790
Os.8434.1.S1_at--452--6471Chr01:33099857..33099881 (25 bp)
GATACCCATCCATCTTGTAAATTGT
LOC_Os01g56790
Os.8434.1.S1_at--698--6891Chr01:33099880..33099904 (25 bp)
GTATACTTGGCAATCTGTTCTAGTT
LOC_Os01g56790
Os.8434.1.S1_at--1028--4871Chr01:33099987..33100011 (25 bp)
GCTTTGGGTTTGCTCATAATTTTTT
LOC_Os01g56790
Os.8434.1.S1_at--839--10791Chr01:33100015..33100039 (25 bp)
TTGTATTACTCCAAGACAGATTTGT
LOC_Os01g56790
Os.8434.1.S1_at--341--6531Chr01:33100033..33100057 (25 bp)
GATTTGTTCATCTTAATAGCAGCAA
LOC_Os01g56790
Os.8434.1.S1_at--258--5051Chr01:33100051..33100075 (25 bp)
GCAGCAAAGGAGTCATGTGGGTATA
LOC_Os01g56790
Os.8434.1.S1_at--552--2251Chr01:33100089..33100113 (25 bp)
AAATAGACTTCGATGGTACCTTCAG
LOC_Os01g56790
Os.8434.1.S1_at--313--7851Chr01:33100103..33100127 (25 bp)
GGTACCTTCAGTTTTGAATTGCTTC
LOC_Os01g56790
Target Sequence 
GCTGGTAGTAAATAACACGCACAACTTCTTTTTAGTTTTTTACACAACTTATTTGTATAGCAGATACCCATCCATCTTGT
AAATTGTATACTTGGCAATCTGTTCTAGTTTGAGGGAAATTGCATAGAAAAAGCTTGTATTAAACACAAGGCAGACATAA
TTGTAAGCTGTGCATGTTTTTCATTTTTTTGAGCTTTGGGTTTGCTCATAATTTTTTTAATTGTATTACTCCAAGACAGA
TTTGTTCATCTTAATAGCAGCAAAGGAGTCATGTGGGTATATAATCTGAAGTTGAAATAGACTTCGATGGTACCTTCAGT
TTTGAATTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis