Browse Element(s) Details


Os.8445.1.S1_at

Description gb:AY323129.1
DB_XREF= gi:32493109
GEN=RHF
TID=Os.8445.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8445 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RING-H2 zinc finger protein (RHF) mRNA, complete cds.
PROD=putative RING-H2 zinc finger protein
FL= gb:AK068493.1 gb:AK104853.1 gb:AY323129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3643011/11RING-H2 finger protein RHF2a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8445.1.S1_at--385--3551Chr11:20979807..20979831 (25 bp)
CATCTGTGGCAGATCTTGGTTCTGA
LOC_Os11g36430
Os.8445.1.S1_at--1128--6931Chr11:20979705..20979729 (25 bp)
GTAGAACAAGTGATGGCCCAGCAAT
LOC_Os11g36430
Os.8445.1.S1_at--554--4551Chr11:20979690..20979714 (25 bp)
GCCCAGCAATATCCACTTCTGAAGT
LOC_Os11g36430
Os.8445.1.S1_at--1122--2391Chr11:20979626..20979650 (25 bp)
AAACAATCCAACTACTGCAGCGACA
LOC_Os11g36430
Os.8445.1.S1_at--491--9571Chr11:20979580..20979604 (25 bp)
TCTTCTGCCCCTTGTGTTACAACAA
LOC_Os11g36430
Os.8445.1.S1_at--266--5571Chr11:20979526..20979550 (25 bp)
GAAAGAAGGCCTGCACATTCCCATT
LOC_Os11g36430
Os.8445.1.S1_at--249--10651Chr11:20979511..20979533 (23 bp)
TTCCCATTCTTCTCCATCAAAGGAT
LOC_Os11g36430
Os.8445.1.S1_at--1070--3512Chr11:20979090..20979110 (21 bp)
CATGATGTTGTCATCCTCAGCATTG
LOC_Os11g36430
Os.8445.1.S1_at--691--1531Chr11:20979072..20979096 (25 bp)
AGCATTGCATAAATCACCTCCAGAA
LOC_Os11g36430
Os.8445.1.S1_at--605--7551Chr11:20979009..20979033 (25 bp)
GGGCTCAGCCCGAGGTATTACCTTA
LOC_Os11g36430
Os.8445.1.S1_at--626--10091Chr11:20978986..20979010 (25 bp)
TAGGATGCCGATTTGTTCTGCTTCA
LOC_Os11g36430
Target Sequence 
CATCTGTGGCAGATCTTGGTTCTGAAGTAAGAAGAGAAGTTAATGCTGGAATTGCNTCCGTATCAAGGATGATGGAGCGT
CTGGAAACTAGAGGTAGTAATGGTAGAACAAGTGATGGCCCAGCAATATCCACTTCTGAAGTTATTCCCAGTACAGAATC
AAGCAATGAGAGAGTTACAGAAAACAATCCAACTACTGCAGCGACANAGTANTNGCAACACTTCTGCGTCTTCTGCCCCT
TGTGTTACAACAACCGGNTCAAATTAGNNCATGTTATAGGTTCNGAAAGAAGGCCTGCACATTCCCATTCTTCTCCATCA
AAGGATTGCCATTGCCAGGCATGGGCAGGTGACCAAAAGCAACGTCATGATGTTGTCATCCTCAGCATTGCATAAATCAC
CTCCAGAAANTCGGAATGACAAATTTGATGTATTGGTTTGATAAAAGGGCTCAGCCCGAGGTATTACCTTAGGATGCCGA
TTTGTTCTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis