Browse Element(s) Details


Os.8452.1.S1_at

Description gb:AK063817.1
DB_XREF= gi:32973835
TID=Os.8452.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H08, full insert sequence.
FL= gb:AK063817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6548011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8452.1.S1_at--147--2611Chr01:38338531..38338555 (25 bp)
AACGCGACGGTCTTGCTCAAATTCT
LOC_Os01g65480
Os.8452.1.S1_at--725--3291Chr01:38338607..38338631 (25 bp)
CAAATTTTCTCAGCCTTGTGTTAAA
LOC_Os01g65480
Os.8452.1.S1_at--350--7031Chr01:38338713..38338737 (25 bp)
GTACATGCCTTTCCAGATGAGCTGT
LOC_Os01g65480
Os.8452.1.S1_at--476--10211Chr01:38338745..38338769 (25 bp)
TATTTTGATGAGATCTCGCCCTCTT
LOC_Os01g65480
Os.8452.1.S1_at--303--4911Chr01:38338845..38338869 (25 bp)
GCTTCATACTATCATTCTACTACCG
LOC_Os01g65480
Os.8452.1.S1_at--412--9231Chr01:38338908..38338932 (25 bp)
TCCAGGCTCATTGTCTTTTGCGAAA
LOC_Os01g65480
Os.8452.1.S1_at--499--6571Chr01:38338961..38338985 (25 bp)
GATTGTTCTCGTCAGTTACAACGGA
LOC_Os01g65480
Os.8452.1.S1_at--728--8591Chr01:38338991..38339015 (25 bp)
TGGTAACAGCTTTGCCTAATCCCTT
LOC_Os01g65480
Os.8452.1.S1_at--171--9771Chr01:38339007..38339031 (25 bp)
TAATCCCTTCCTTGGCTGATGAACT
LOC_Os01g65480
Os.8452.1.S1_at--938--6311Chr01:38339024..38339048 (25 bp)
GATGAACTGCAGCTTTACTTTGTGC
LOC_Os01g65480
Os.8452.1.S1_at--418--5031Chr01:38339086..38339110 (25 bp)
GCAGTTGCTGAAACCCCAAGGGATT
LOC_Os01g65480
Target Sequence 
AACGCGACGGTCTTGCTCAAATTCTGAGAGGATGTGCATGGGATTGATGAGATTGAAATGCAAGGTCCAAGTGTATCAAA
TTTTCTCAGCCTTGTGTTAAACAATCAGAATGAGTACATAAAGAGAGATGCCCTTGTATATACAGGTATAATATATGATG
AAAACCAAGTCTTCTGTGGATAGTACATGCCTTTCCAGATGAGCTGTATGGGTTTATTTTGATGAGATCTCGCCCTCTTC
TTTTNGTCCATATATAATGGCCCATTTAATTAATTACTAACCCCACTTCATTTATTTAAGTATCTAAAAGTGAAGCTTCA
TACTATCATTCTACTACCGTACCCAATGCCACTCCCACCTGCTATGTCCACCTGTTCTCCAGGCTCATTGTCTTTTGCGA
AAAGCACTAACAATCATTCGCCTAATTGNCGATTGTTCTCGTCAGTTACAACGGACGTGCTGGTAACAGCTTTGCCTAAT
CCCTTCCTTGGCTGATGAACTGCAGCTTTACTTTGTGCTTTTCCCCCCTGCTTTTGCTGCACTAGTTGACAGGCTGCAGT
TGCTGAAACCCCAAGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis