Browse Element(s) Details


Os.8464.1.A1_at

Description gb:BI810127
DB_XREF= gi:15857315
DB_XREF=I003F06
CLONE=I003F06
TID=Os.8464.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8464 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194115.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1214011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12080NANA5+6895481..6895831hypothetical protein
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8464.1.A1_at--451--9731Chr05:6916632..6916656 (25 bp)
TCAATGCATGTTGCGCAACTTCCAC
LOC_Os05g12140
Os.8464.1.A1_at--845--6431Chr05:6916595..6916619 (25 bp)
GATCAGTCTGACGACCTGTTAGAAA
LOC_Os05g12140
Os.8464.1.A1_at--214--5271Chr05:6916558..6916582 (25 bp)
GAATGTTTTCGGTCAGGTCTTCCAT
LOC_Os05g12140
Os.8464.1.A1_at--94--9271Chr05:6916529..6916553 (25 bp)
TCCTGAGGCATTTCCATCTGGTTGA
LOC_Os05g12140
Os.8464.1.A1_at--577--8771Chr05:6916448..6916472 (25 bp)
TGTTTGATCATCTTCCACCTTTGTA
LOC_Os05g12140
Os.8464.1.A1_at--622--10771Chr05:6916428..6916452 (25 bp)
TTGTATGAAGTTGGTTCTGGCCCGT
LOC_Os05g12140
Os.8464.1.A1_at--3--8411Chr05:6916410..6916434 (25 bp)
GGCCCGTTGGCCAAATCAAATGAAT
LOC_Os05g12140
Os.8464.1.A1_at--14--10291Chr05:6916386..6916410 (25 bp)
TTTGCTCTGGTGAAGCGAGGTCCTA
LOC_Os05g12140
Os.8464.1.A1_at--270--8811Chr05:6916306..6916330 (25 bp)
TGATCGAACCAGCAGTTTTTCCAGC
LOC_Os05g12140
Os.8464.1.A1_at--667--6871Chr05:6916257..6916281 (25 bp)
GTATTGTTTTACATGTCCGCTTGTC
LOC_Os05g12140
Os.8464.1.A1_at--6--4231Chr05:6916241..6916265 (25 bp)
CCGCTTGTCTGTATTTCCTAGGATG
LOC_Os05g12140
Target Sequence 
TCAATGCATGTTGCGCAACTTCCACCAGAACTGCGAAGATCAGTCTGACGACCTGTTAGAAAATATGAATGGAAGAATGT
TTTCGGTCAGGTCTTCCATCCATTCCTGAGGCATTTCCATCTGGTTGATGGCTGAAAACATGGATCTAAACTATTGATGC
TTTGGGATCTGTGGTGCTGTTTGATGTTTGATCATCTTCCACCTTTGTATGAAGTTGGTTCTGGCCCGTTGGCCAAATCA
AATGAATTTGCTCTGGTGAAGCGAGGTCCTAGAACATATTTCTGGATATGTTCATCCTGTTCCTTTTTGGGTTTGAAGAC
GGTAGCTGATCGAACCAGCAGTTTTTCCAGCAATTTTCTTGGTTACTTTCATCTTGTATTGTTTTACATGTCCGCTTGTC
TGTATTTCCTAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8464.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis