Browse Element(s) Details


Os.8489.1.A1_at

Description gb:AK101754.1
DB_XREF= gi:32986963
TID=Os.8489.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063J16, full insert sequence.
FL= gb:AK101754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3335011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33320Os.8712.1.S2_at11/118+20643254..20649547expressed protein
LOC_Os08g33320Os.8712.1.S1_at11/118+20643254..20649547expressed protein
LOC_Os08g33330Os.16162.1.S1_at10/118+20657585..20661844myosin-like protein, putative, expressed
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8489.1.A1_at--564--9851Chr08:20670234..20670258 (25 bp)
TACAATGGTGCGCTCCACTGTGACG
LOC_Os08g33350
Os.8489.1.A1_at--877--3331Chr08:20670219..20670243 (25 bp)
CACTGTGACGGCGTGTCCGAGATTG
LOC_Os08g33350
Os.8489.1.A1_at--638--91Chr08:20670186..20670210 (25 bp)
ATTCTGCGCGTCACAAAATGGCCTG
LOC_Os08g33350
Os.8489.1.A1_at--961--8411Chr08:20670167..20670191 (25 bp)
GGCCTGATTTTTCATGGTGCAAGAA
LOC_Os08g33350
Os.8489.1.A1_at--288--1871Chr08:20670110..20670134 (25 bp)
ACGACGCAGGATTGGCAGTGCCAGA
LOC_Os08g33350
Os.8489.1.A1_at--845--9191Chr08:20670092..20670116 (25 bp)
TGCCAGATCAGGACGACACTCCTAA
LOC_Os08g33350
Os.8489.1.A1_at--682--7531Chr08:20670067..20670091 (25 bp)
GTGGCACACGCCTAGCACAGGTAAT
LOC_Os08g33350
Os.8489.1.A1_at--1156--2631Chr08:20670013..20670037 (25 bp)
AACCATCATCATAGGTGCTGCTCTT
LOC_Os08g33350
Os.8489.1.A1_at--599--3631Chr08:20669962..20669986 (25 bp)
CTTGCTGTGCAGTCAATCTTGGTTA
LOC_Os08g33350
Os.8489.1.A1_at--1149--711Chr08:20669897..20669921 (25 bp)
ATGATTTGGCCATCTTGCAGGGAAG
LOC_Os08g33350
Os.8489.1.A1_at--667--2791Chr08:20669875..20669899 (25 bp)
AAGAGGACCTTGTTCGACGATGGGA
LOC_Os08g33350
Target Sequence 
TACAATGGTGCGCTCCACTGTGACGGCGTGTCCGAGATTGGAGGCCGCATTCTGCGCGTCACAAAATGGCCTGATTTTTC
ATGGTGCAAGAAACGAAGAATAGGGAGAGCTGGTTGTGACAAGGACGACGCAGGATTGGCAGTGCCAGATCAGGACGACA
CTCCTAAGTGGCACACGCCTAGCACAGGTAATATGCAGAGGTTGCTGATCTTTAATTGTTTAACCATCATCATAGGTGCT
GCTCTTGCCTTAATTTGTAGCTGATGTGATGACTTGCTGTGCAGTCAATCTTGGTTAATGTTATAACATTTCTGGCTTTG
GTTAGTAGATGATGATGATGATTTGGCCATCTTGCAGGGAAGAGGACCTTGTTCGACGATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8489.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis