Browse Element(s) Details


OsAffx.17311.1.S1_s_at

Description tigr:9636.m03347
TID=OsAffx.17311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17311.1.S1_s_at--987--9011Chr08:20697414..20697438 (25 bp)
TGCACTTCCTGAGAGTTCTTTTAAA
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--1162--1991Chr08:20697418..20697442 (25 bp)
CTTCCTGAGAGTTCTTTTAAAGATA
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--563--2311Chr08:20697436..20697460 (25 bp)
AAAGATATTACCGTCTCTCTCAACG
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--161--231Chr08:20697440..20697464 (25 bp)
ATATTACCGTCTCTCTCAACGCTTA
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--503--9471Chr08:20697449..20697473 (25 bp)
TCTCTCTCAACGCTTACCGGAATTG
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--54--3771Chr08:20697452..20697476 (25 bp)
CTCTCAACGCTTACCGGAATTGCAG
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--548--3251Chr08:20697456..20697480 (25 bp)
CAACGCTTACCGGAATTGCAGATTC
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--794--4111Chr08:20697459..20697483 (25 bp)
CGCTTACCGGAATTGCAGATTCGAT
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--1119--1711Chr08:20697464..20697488 (25 bp)
ACCGGAATTGCAGATTCGATCTATT
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--300--10631Chr08:20697478..20697502 (25 bp)
TTCGATCTATTTGCTTCGACTGCAA
LOC_Os08g33400
OsAffx.17311.1.S1_s_at--287--10251Chr08:20697487..20697509 (23 bp)
TTTGCTTCGACTGCAAAAGCAGGCT
LOC_Os08g33400
Target Sequence 
TGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTT
CGACTGCAAAAGCAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17311.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis