Browse Element(s) Details


OsAffx.29489.1.S1_at

Description tigr:9636.m03350
TID=OsAffx.29489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Formin Homology 2 Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3343011/11Formin Homology 2 Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29489.1.S1_at--795--791Chr08:20724810..20724834 (25 bp)
ATGGGAAGACAACCCTACTGCACTT
LOC_Os08g33430
OsAffx.29489.1.S1_at--682--671Chr08:20724888..20724912 (25 bp)
ATGAAACACCCAGCTCTTGTCATGA
LOC_Os08g33430
OsAffx.29489.1.S1_at--288--7131Chr08:20724906..20724930 (25 bp)
GTCATGACACACCAACTGAACGAGA
LOC_Os08g33430
OsAffx.29489.1.S1_at--33--1291Chr08:20725009..20725033 (25 bp)
AGATCTGGATACCTTGCGAAACTCA
LOC_Os08g33430
OsAffx.29489.1.S1_at--409--2271Chr08:20725039..20725063 (25 bp)
AAATCTATCCTGTGGGCTGGCTCAA
LOC_Os08g33430
OsAffx.29489.1.S1_at--90--5971Chr08:20725079..20725103 (25 bp)
GAGAAGGACCTAGCCAGTGATGACA
LOC_Os08g33430
OsAffx.29489.1.S1_at--641--9571Chr08:20725116..20725140 (25 bp)
TCTTGCAATGCATGAAATCCTTCCT
LOC_Os08g33430
OsAffx.29489.1.S1_at--387--5591Chr08:20725129..20725153 (25 bp)
GAAATCCTTCCTAAATCATGCAGAG
LOC_Os08g33430
OsAffx.29489.1.S1_at--146--5411Chr08:20725181..20725205 (25 bp)
GAAGCTCAAGTCCTACTCAATGTCA
LOC_Os08g33430
OsAffx.29489.1.S1_at--870--2911Chr08:20725241..20725265 (25 bp)
AAGGATGAGTCCAATCTGCTCCAAA
LOC_Os08g33430
OsAffx.29489.1.S1_at--410--9491Chr08:20725255..20725279 (25 bp)
TCTGCTCCAAATATTCATCATCGTG
LOC_Os08g33430
Target Sequence 
ATGGGAAGACAACCCTACTGCACTTTGTTGTAAAAGAGATGGCTCGTTCAAAAGGATTAAAGGCTTTAGAAAAGCTCAAT
GAAACACCCAGCTCTTGTCATGACACACCAACTGAACGAGAGGAGTATTCATCAATGGGTACAGAATTTGTCTCTGAGCT
AAGTAATGAACTAGGCAACGTCAAGAAGGTAGCAAGCATAGATCTGGATACCTTGCGAAACTCAATATCAAATCTATCCT
GTGGGCTGGCTCAACTGAGAAATCTTGTTGAGAAGGACCTAGCCAGTGATGACAAGAACAATAACTTCTTGCAATGCATG
AAATCCTTCCTAAATCATGCAGAGAATACTATGCAGGGGCTCAAAGCTGATGAAGCTCAAGTCCTACTCAATGTCAGGGA
ACTAACGGAGTACTATCATGGAGAGGTCAGCAAGGATGAGTCCAATCTGCTCCAAATATTCATCATCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis