Browse Element(s) Details


Os.7046.1.S1_at

Description gb:AK058993.1
DB_XREF= gi:32969011
TID=Os.7046.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F11, full insert sequence.
FL= gb:AK100797.1 gb:AK058993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3346011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein
LOC_Os08g33479Os.54324.1.S1_at10/118+20751081..20753399expressed protein
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7046.1.S1_at--959--2891Chr08:20740924..20740948 (25 bp)
AAGGTCGTCGGCAATTTCTCCGCGC
LOC_Os08g33460
Os.7046.1.S1_at--358--6131Chr08:20741144..20741168 (25 bp)
GAGGGTTCATGTACGCCTACCAGAA
LOC_Os08g33460
Os.7046.1.S1_at--70--6151Chr08:20741209..20741233 (25 bp)
GAGGTCGCCCGCTACAAGTACAAGC
LOC_Os08g33460
Os.7046.1.S1_at--468--5531Chr08:20741242..20741266 (25 bp)
GAAACTTTATCGATTCGCTGCGTTC
LOC_Os08g33460
Os.7046.1.S1_at--699--4771Chr08:20741282..20741306 (25 bp)
GCTGCTGCAAGCGTTTACATCTTTT
LOC_Os08g33460
Os.7046.1.S1_at--264--7551Chr08:20741361..20741385 (25 bp)
GTGGCCTTGGCTGAATAAATGTTGT
LOC_Os08g33460
Os.7046.1.S1_at--655--2991Chr08:20741378..20741402 (25 bp)
AATGTTGTACGCTGCACGCTTGTGA
LOC_Os08g33460
Os.7046.1.S1_at--896--1831Chr08:20741393..20741417 (25 bp)
ACGCTTGTGAGGAATTCGTGCTACA
LOC_Os08g33460
Os.7046.1.S1_at--647--9411Chr08:20741408..20741432 (25 bp)
TCGTGCTACAATTTAGCTCCCTTTG
LOC_Os08g33460
Os.7046.1.S1_at--1059--1571Chr08:20741422..20741446 (25 bp)
AGCTCCCTTTGCCATGGTTTAGTGG
LOC_Os08g33460
Os.7046.1.S1_at--43--3111Chr08:20741471..20741495 (25 bp)
AATTTATGGAACTGAATGTGACCCC
LOC_Os08g33460
Target Sequence 
AAGGTCGTCGGCAATTTCTCCGCGCTCGACTACCTCCGCCTCTCCACCATCTCCGNCGTCTCCGTCACCGTCGGCTACCT
CTCCGGGATCAAGCCGGGGATCCGCGGGCCATCGATGGTGACGGGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACG
CCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAG
TGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTNTNTTCTTTTT
CCTGATGATCTCGTTTTAGCNTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGC
TTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTA
TGGAACTGAATGTGACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis