Browse Element(s) Details


Os.18500.1.S1_at

Description gb:AK070015.1
DB_XREF= gi:32980039
TID=Os.18500.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040H11, full insert sequence.
FL= gb:AK070015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3344011/11dihydrolipoamide S-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein
LOC_Os08g33479Os.54324.1.S1_at10/118+20751081..20753399expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18500.1.S1_at--371--10491Chr08:20727850..20727874 (25 bp)
TTACACTGTCAAACTTGGGTATGTT
LOC_Os08g33440
Os.18500.1.S1_at--695--10651Chr08:20727703..20727823 (25 bp)
TTCCACCTGGCCAGGGAGGCATAAT
LOC_Os08g33440
Os.18500.1.S1_at--1014--8271Chr08:20727686..20727710 (25 bp)
GGCATAATGGCTGTCGGAGCCTCAA
LOC_Os08g33440
Os.18500.1.S1_at--624--9431Chr08:20727673..20727697 (25 bp)
TCGGAGCCTCAAAACCTACAGTGGT
LOC_Os08g33440
Os.18500.1.S1_at--546--6251Chr08:20727638..20727662 (25 bp)
GATGGTTTCTTTAGTGTCAAGAGCA
LOC_Os08g33440
Os.18500.1.S1_at--877--5191Chr08:20726285..20726309 (25 bp)
GAATTGTATACGGTGCTGATCTGGC
LOC_Os08g33440
Os.18500.1.S1_at--564--7971Chr08:20726227..20726251 (25 bp)
GGATCCTGAGAGCTTAACTTTGTAA
LOC_Os08g33440
Os.18500.1.S1_at--163--6511Chr08:20726202..20726226 (25 bp)
GATTTCCTTGGAAGTTTCAACTATC
LOC_Os08g33440
Os.18500.1.S1_at--163--8031Chr08:20726150..20726174 (25 bp)
GGAGGTCTATTGTCGAATACCATTT
LOC_Os08g33440
Os.18500.1.S1_at--924--9671Chr08:20726113..20726137 (25 bp)
TCACTCATCGGGTATTACTTTTCGG
LOC_Os08g33440
Os.18500.1.S1_at--797--10651Chr08:20726073..20726097 (25 bp)
TTCCTTCTGAATGTTGGGTACTGTT
LOC_Os08g33440
Target Sequence 
TTACACTGTCAAACTTGGGTATGTTTGGTGTTGATAGATTTGATGCAATTCTTCCACCTGGCCAGGGAGGCATAATGGCT
GTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGGTTAATGTCAC
NGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCATTCCNTGCAAACTTTTGCAAAGATTATTGAGGATCCTGAG
AGCTTAACTTTGTAAGATTTCCTTGGAAGTTTCAACTATCTTCGCNAATCATTAGTTTGATTCCTATGGAGGTCTATTGT
CGAATACCATTTTTGTATCTTTAATCACTCATCGGGTATTACTTTTCGGTTGTTTGTACTATTTTTCCTTCTGAATGTTG
GGTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis