Browse Element(s) Details


Os.14960.1.S1_at

Description gb:AK070049.1
DB_XREF= gi:32980073
TID=Os.14960.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038D22, full insert sequence.
FL= gb:AK070049.1 gb:AK069476.1 gb:AK058831.1 gb:AK072110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3342011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14960.1.S1_at--121--1071Chr08:20719623..20719647 (25 bp)
AGGGTTTCCAACCTGGTGATGTCCA
LOC_Os08g33420
Os.14960.1.S1_at--158--6331Chr08:20719648..20719672 (25 bp)
GATGAAGTCACTCCACGACTGACAT
LOC_Os08g33420
Os.14960.1.S1_at--315--5731Chr08:20719664..20719688 (25 bp)
GACTGACATGTTTTAGCCTTTTCTT
LOC_Os08g33420
Os.14960.1.S1_at--1000--10631Chr08:20719688..20719712 (25 bp)
TTCCGGATTTCAACAGCCTTGGCGA
LOC_Os08g33420
Os.14960.1.S1_at--383--4971Chr08:20719727..20719751 (25 bp)
GCATCCCCAGGTTATTTAGTCACAA
LOC_Os08g33420
Os.14960.1.S1_at--60--7871Chr08:20719761..20719785 (25 bp)
GGTATCCTGATCATCTTGAGAGCTC
LOC_Os08g33420
Os.14960.1.S1_at--873--3011Chr08:20719788..20719812 (25 bp)
AATGCTTATTCGCTCGGATGTCCAG
LOC_Os08g33420
Os.14960.1.S1_at--178--4291Chr08:20719869..20719893 (25 bp)
CCATTTTGTCTCACTTTAGGGTCTT
LOC_Os08g33420
Os.14960.1.S1_at--693--2331Chr08:20719934..20719958 (25 bp)
AAAGATAGCTGGCTCATTCCACCTC
LOC_Os08g33420
Os.14960.1.S1_at--481--5031Chr08:20719960..20719984 (25 bp)
GCAGTTTCCAGAGTCCCTTTTTTGT
LOC_Os08g33420
Os.14960.1.S1_at--1035--10791Chr08:20720093..20720117 (25 bp)
TTGTTCTTCTGCCTATGTGGTGTTA
LOC_Os08g33420
Target Sequence 
AGGGTTTCCAACCTGGTGATGTCCAGATGAAGTCACTCCACGACTGACATGTTTTAGCCTTTTCTTTCCGGATTTCAACA
GCCTTGGCGAGATGTGAGTTTGATGCATCCCCAGGTTATTTAGTCACAACTCACAACTGGTATCCTGATCATCTTGAGAG
CTCTGAATGCTTATTCGCTCGGATGTCCAGGATGCAAGCATGGAGGAGCACACTGTTGTATTTATGACTGATCTAGATGA
GTTTTACCATTTTGTCTCACTTTAGGGTCTTGTAGGGTGTTTTAACCGTCTTGTTGTTTAGTTGGTGTTACAAAGATAGC
TGGCTCATTCCACCTCGGCAGTTTCCAGAGTCCCTTTTTTGTNTTTGTTTCAGCAGTCCAATATCCAATTTAATTTGTTC
ATCAGCTGTTATAGATGTTCTTATAGTATACTCTCTGAAATGATAATATTTACATCGTCATACGAGTTTTTTGTTCTTCT
GCCTATGTGGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis