Browse Element(s) Details


OsAffx.29490.1.S1_at

Description tigr:9636.m03354
TID=OsAffx.29490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3347011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein
LOC_Os08g33479Os.54324.1.S1_at10/118+20751081..20753399expressed protein
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29490.1.S1_at--27--951Chr08:20746122..20746146 (25 bp)
AGGAATGGTTGCGTGCCCTGAGCAC
LOC_Os08g33470
OsAffx.29490.1.S1_at--530--5291Chr08:20746124..20746148 (25 bp)
GAATGGTTGCGTGCCCTGAGCACAA
LOC_Os08g33470
OsAffx.29490.1.S1_at--428--8571Chr08:20746127..20746151 (25 bp)
TGGTTGCGTGCCCTGAGCACAATTC
LOC_Os08g33470
OsAffx.29490.1.S1_at--529--4651Chr08:20746132..20746156 (25 bp)
GCGTGCCCTGAGCACAATTCCGAAG
LOC_Os08g33470
OsAffx.29490.1.S1_at--187--4551Chr08:20746136..20746160 (25 bp)
GCCCTGAGCACAATTCCGAAGGGAG
LOC_Os08g33470
OsAffx.29490.1.S1_at--839--4131Chr08:20746167..20746191 (25 bp)
CGCGGTGGAAGGCATCGGTCATCGA
LOC_Os08g33470
OsAffx.29490.1.S1_at--753--8191Chr08:20746192..20746216 (25 bp)
GGAAGATGGGAAGCGTGCTCCACAC
LOC_Os08g33470
OsAffx.29490.1.S1_at--891--9091Chr08:20746262..20746286 (25 bp)
TGCTCCCCATCGTCGGTGGAAGGTG
LOC_Os08g33470
OsAffx.29490.1.S1_at--7--9291Chr08:20746265..20746289 (25 bp)
TCCCCATCGTCGGTGGAAGGTGTCG
LOC_Os08g33470
OsAffx.29490.1.S1_at--847--8691Chr08:20746285..20746309 (25 bp)
TGTCGGCGGAAACCGGTCCACACCG
LOC_Os08g33470
OsAffx.29490.1.S1_at--918--9171Chr08:20746362..20746386 (25 bp)
TGCCGCTCCTCGTCGTTGGTGGAAG
LOC_Os08g33470
Target Sequence 
AGGAATGGTTGCGTGCCCTGAGCACAATTCCGAAGGGAGACGGCGCGCGGTGGAAGGCATCGGTCATCGAGGAAGATGGG
AAGCGTGCTCCACACCGCCTCTCCTCGTCGCCGCTGCTCCACGCTGCCGCTCCTCTTCCCTGCTCCCCATCGTCGGTGGA
AGGTGTCGGCGGAAACCGGTCCACACCGCTGCTCCTCGCCCCCTCTGCTCCGTGGAGCCATCCTCGTCCCAGTTCCGCGC
TGCCGCTCCTCGTCGTTGGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis