Browse Element(s) Details


Os.8564.1.S1_at

Description gb:AK059969.1
DB_XREF= gi:32969987
TID=Os.8564.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G08, full insert sequence.
FL= gb:AK059969.1 gb:AK104179.1 gb:AK104250.1 gb:AK104015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0339011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein
LOC_Os11g03370Os.35343.1.A1_at11/1111+1268315..1270180NAC-domain containing protein 21/22, putative, expressed
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03420Os.16784.1.S1_at11/1111+1297251..1297987ZF-HD protein dimerisation region containing protein, expressed
LOC_Os11g03430Os.54171.1.S1_at11/1111+1305317..1307674CDC45-like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8564.1.S1_at--1103--5071Chr11:1280152..1280259 (25 bp)
GCAGCCTCCTCATCTTTGGTGACAT
LOC_Os11g03390
Os.8564.1.S1_at--596--6291Chr11:1280337..1280361 (25 bp)
GATGATCGTCGATGTGTCCAGTGAC
LOC_Os11g03390
Os.8564.1.S1_at--505--8311Chr11:1280391..1280415 (25 bp)
GGCTCAAGTATCAGCGGCAACTCAA
LOC_Os11g03390
Os.8564.1.S1_at--142--2371Chr11:1280417..1280441 (25 bp)
AAACCAATTAGCAACCTCCCTCTTG
LOC_Os11g03390
Os.8564.1.S1_at--572--9571Chr11:1280437..1280461 (25 bp)
TCTTGCCATCTACTGCTTAATGCTG
LOC_Os11g03390
Os.8564.1.S1_at--463--2731Chr11:1280476..1280500 (25 bp)
AAGAAGCACCAGCTGTTACCCAATG
LOC_Os11g03390
Os.8564.1.S1_at--326--10471Chr11:1280491..1280515 (25 bp)
TTACCCAATGCCTGACATGAAGCGC
LOC_Os11g03390
Os.8564.1.S1_at--429--8991Chr11:1280508..1280532 (25 bp)
TGAAGCGCATGTTACGAACGACAGA
LOC_Os11g03390
Os.8564.1.S1_at--24--8211Chr11:1280572..1280596 (25 bp)
GGAATGTCATCTCATCTGTATTATC
LOC_Os11g03390
Os.8564.1.S1_at--527--671Chr11:1280605..1280629 (25 bp)
ATGAACGTCATCTGTAGCCATTAAG
LOC_Os11g03390
Os.8564.1.S1_at--250--3151Chr11:1280632..1280656 (25 bp)
AATTCACGAAGCAACAACTCTGCAT
LOC_Os11g03390
Target Sequence 
GCAGCCTCCTCATCTTTGGTGACATCCACCTGGCCATGTTCCGTGTCTCCAAGATGATCGTCGATGTGTCCAGTGACACC
AATGNAGCTGAGCAGGAAGCTGAGACGGCTCAAGTATCAGCGGCAACTCAACAAACCAATTAGCAACCTCCCTCTTGCCA
TCTACTGCTTAATGCTGAAGGCAAGCAGCTCAAGAAGCACCAGCTGTTACCCAATGCCTGACATGAAGCGCATGTTACGA
ACGACAGAGTTTNTTTGCAAATAAGTGCATACAGATGTTGTGTGATAGGAATGTCATCTCATCTGTATTATCTAAAAATA
ATGAACGTCATCTGTAGCCATTAAGAAAATTCACGAAGCAACAACTCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis