Browse Element(s) Details


Os.8599.1.S1_at

Description gb:CA764882
DB_XREF= gi:27546746
DB_XREF=AF53-Rpf_05_E22_T7_083.ab1
CLONE=C0001654
TID=Os.8599.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8599 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567864.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4234011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8599.1.S1_at--760--5611Chr04:24839427..24839451 (25 bp)
GACAAGCTACTCAATACCAGCGAGA
LOC_Os04g42340
Os.8599.1.S1_at--93--5331Chr04:24839458..24839482 (25 bp)
GAAGTGTAACGCAGCCACAGAGACT
LOC_Os04g42340
Os.8599.1.S1_at--424--5951Chr04:24839549..24839573 (25 bp)
GAGCAAAGAGCTCGCCAATTGGGTT
LOC_Os04g42340
Os.8599.1.S1_at--1091--10811Chr04:24839567..24839591 (25 bp)
TTGGGTTGGCAGGACTCTAGACCTA
LOC_Os04g42340
Os.8599.1.S1_at--576--1371Chr04:24839585..24839609 (25 bp)
AGACCTAGAGTCACAACCATTTGAT
LOC_Os04g42340
Os.8599.1.S1_at--303--4931Chr04:24839611..24839635 (25 bp)
GCTTGACATGTCGTTGTATTTCCTT
LOC_Os04g42340
Os.8599.1.S1_at--30--8771Chr04:24839625..24839649 (25 bp)
TGTATTTCCTTTTTCTTCTACAGGT
LOC_Os04g42340
Os.8599.1.S1_at--435--10251Chr04:24839659..24839683 (25 bp)
TTTGGTAGCTGCTGGATTGCATCCT
LOC_Os04g42340
Os.8599.1.S1_at--66--6591Chr04:24839673..24839697 (25 bp)
GATTGCATCCTGCAGCCAAACCGAG
LOC_Os04g42340
Os.8599.1.S1_at--843--1511Chr04:24839696..24839720 (25 bp)
AGCAGTGTTAATTGTACGGCTCCAC
LOC_Os04g42340
Os.8599.1.S1_at--1065--6991Chr04:24839709..24839733 (25 bp)
GTACGGCTCCACTTGTAATGTATGT
LOC_Os04g42340
Target Sequence 
GACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTNT
GAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAG
ACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAG
CTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis