Browse Element(s) Details


Os.8619.1.S1_at

Description gb:AK059953.1
DB_XREF= gi:32969971
TID=Os.8619.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C02, full insert sequence.
FL= gb:AK099024.1 gb:AK071742.1 gb:AK059953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g368597/11signal peptidase complex 25 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009003molecular_functionsignal peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8619.1.S1_at--525--2231Chr04:22028833..22028857 (25 bp)
ACAATAGCCAGTGCAGATCCCCAGT
LOC_Os04g36859
Os.8619.1.S1_at--109--211Chr04:22028806..22028830 (25 bp)
ATTTCCGCCAATAAGCCAGTTCATT
LOC_Os04g36859
Os.8619.1.S1_at--907--8031Chr04:22028073..22028097 (25 bp)
GGAGTTCTCGTGGAAGGCCTGTTCT
LOC_Os04g36859
Os.8619.1.S1_at--752--6311Chr04:22028025..22028049 (25 bp)
GATGACTACAACACTGAGCGCAAGG
LOC_Os04g36859
Os.8619.1.S1_at--1032--5531Chr04:22027949..22027973 (25 bp)
GAAACCCTCTTGTGGAATTCCTTGC
LOC_Os04g36859
Os.8619.1.S1_at--984--7111Chr04:22027886..22027910 (25 bp)
GTCATACATTACTGTTTCACTGGTG
LOC_Os04g36859
Os.8619.1.S1_at--1155--5911Chr04:22027813..22027837 (25 bp)
GAGCTTACAAGCCTATCGATGGTTA
LOC_Os04g36859
Os.8619.1.S1_at--516--291Chr04:22027785..22027809 (25 bp)
ATAGATACCAGCACTGAGCTCTGTA
NONE
Os.8619.1.S1_at--469--5911Chr04:22027770..22027794 (25 bp)
GAGCTCTGTACGTTCTGCTTATATG
NONE
Os.8619.1.S1_at--653--6971Chr04:22027640..22027664 (25 bp)
GTACCAACAACTACCAGTGTCGTCG
NONE
Os.8619.1.S1_at--318--7451Chr04:22027624..22027648 (25 bp)
GTGTCGTCGAAATACGTACTCTCCT
NONE
Target Sequence 
ACAATAGCCAGTGCAGATCCCCAGTCTATTTCCGCCAATAAGCCAGTTCATTTCACTAAGAGTGTTACAAAATGGTTTAC
TAAGGAAGGAGTTCTCGTGGAAGGCCTGTTCTGGAAGGATGTTGAGAGGTTGATTGATGACTACAACACTGAGCGCAAGG
GCAAATGAATGGGTAGTCCATGTGACTATGAGACGTTAATTGTCTAGAAAAGAAACCCTCTTGTGGAATTCCTTGCTTGG
AAGAATCCTTAGCTTAATCAAAATAGACAATTTTGTCATACATTACTGTTTCACTGGTGATTGAAATACTGTCGAAGACA
CCCGGTACCATCCCAATTCTTTTTTATGAGCTTACAAGCCTATCGATGGTTAATCATAGATACCAGCACTGAGCTCTGTA
CGTTCTGCTTATATGACAACATGAATGAAATTGCCTCAGGAAAACAGAAAAATGTATTATGCCAATAGCCAAAAATCCTT
GTAAATAATTCCTTCTGTACACATATTTTGGACTGGTAAGGTACCAACAACTACCAGTGTCGTCGAAATACGTACTCTCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis