Browse Element(s) Details


Os.8621.1.S1_a_at

Description gb:AK059493.1
DB_XREF= gi:32969511
TID=Os.8621.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013004L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H04, full insert sequence.
FL= gb:AK059493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3730011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8621.1.S1_a_at--12--1771Chr08:23442976..23443000 (25 bp)
ACCTGCAGTCCCCAAGCTGACAGTG
LOC_Os08g37300
Os.8621.1.S1_a_at--129--3531Chr08:23443011..23443035 (25 bp)
CATCTGTTCCTATCCCAAAGGTTAC
LOC_Os08g37300
Os.8621.1.S1_a_at--932--2231Chr08:23443058..23443082 (25 bp)
ACAATTCCATCTCTTCCAATTCCGG
LOC_Os08g37300
Os.8621.1.S1_a_at--994--3231Chr08:23443101..23443125 (25 bp)
CAACCATTCCTACAGTTCCTGTTAC
LOC_Os08g37300
Os.8621.1.S1_a_at--643--1291Chr08:23443212..23443236 (25 bp)
AGATGCCACCAATCCCATTCATGTC
LOC_Os08g37300
Os.8621.1.S1_a_at--163--2652Chr08:23443249..23443273 (25 bp)
AACCACTAGCCCCTGAAGTTCTTCA
LOC_Os08g37300
Os.8621.1.S1_a_at--889--6511Chr08:23443287..23443311 (25 bp)
GATATTCATGGTTACTAGTCAGGGA
LOC_Os08g37300
Os.8621.1.S1_a_at--249--7891Chr08:23443315..23443339 (25 bp)
GGTTAGGCATATGTTGCCATCATAT
LOC_Os08g37300
Os.8621.1.S1_a_at--988--6791Chr08:23443365..23443389 (25 bp)
GTTATTGGAGTTATACTGGCTTGCA
LOC_Os08g37300
Os.8621.1.S1_a_at--759--1951Chr08:23443379..23443403 (25 bp)
ACTGGCTTGCATTGGTGTGATTGTA
LOC_Os08g37300
Os.8621.1.S1_a_at--124--9051Chr08:23443406..23443430 (25 bp)
TGCAGCTAGGCAGTTGTACTATCAT
LOC_Os08g37300
Target Sequence 
ACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTG
GCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCA
ATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGAT
GCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCAT
GGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGT
TATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8621.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis