Browse Element(s) Details


Os.8688.2.S1_at

Description gb:AK107130.1
DB_XREF= gi:32992339
TID=Os.8688.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative COP1(CONSTITUTIVE PHOTOMORPHOGENIC1)-interacting protein 7 (CIP7) (P0030H06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C04, full insert sequence.
FL= gb:AK107130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26420OsAffx.28597.1.S1_at11/117+15182886..15185609hypothetical protein
LOC_Os07g26420Os.51832.1.S1_at1/117+15182886..15185609hypothetical protein
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009416biological_processresponse to light stimulus
GO:0009718biological_processanthocyanin biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8688.2.S1_at--765--5931Chr07:15204096..15204120 (25 bp)
GAGCAGGTATTGTTTCTATTTTCCC
LOC_Os07g26440
Os.8688.2.S1_at--717--10191Chr07:15204080..15204104 (25 bp)
TATTTTCCCCTTTCTTGTCTCCAAG
LOC_Os07g26440
Os.8688.2.S1_at--1138--3671Chr07:15204071..15204095 (25 bp)
CTTTCTTGTCTCCAAGCAGTTTGAA
LOC_Os07g26440
Os.8688.2.S1_at--368--1532Chr05:11379720..11379800 (24 bp)
AGCAGTTTGAAACTTAGTTCTTCTG
NONE
Os.8688.2.S1_at--184--9471Chr07:15204036..15204060 (25 bp)
TCTGCATGGTGTAAATTTAGGTACA
LOC_Os07g26440
Os.8688.2.S1_at--114--10371Chr07:15203997..15204021 (25 bp)
TTTTTAATCCTTATCATCACTCCAA
LOC_Os07g26440
Os.8688.2.S1_at--1074--9591Chr07:15203984..15204008 (25 bp)
TCATCACTCCAAAAGCACCAAGTCT
LOC_Os07g26440
Os.8688.2.S1_at--941--5071Chr07:15203970..15203994 (25 bp)
GCACCAAGTCTGAACACAATACTGA
LOC_Os07g26440
Os.8688.2.S1_at--766--3091Chr07:15203953..15203977 (25 bp)
AATACTGAATAACGGCAACTTTCTG
LOC_Os07g26440
Os.8688.2.S1_at--107--8231Chr07:15203940..15203964 (25 bp)
GGCAACTTTCTGTTATTTTACCTAT
LOC_Os07g26440
Os.8688.2.S1_at--741--1731Chr07:15203921..15203945 (25 bp)
ACCTATACAGTAATGCATCAACAGA
LOC_Os07g26440
Target Sequence 
GAGCAGGTATTGTTTCTATTTTCCCCTTTCTTGTCTCCAAGCAGTTTGAAACTTAGTTCTTCTGCATGGTGTAAATTTAG
GTACATTAGTTGACAATTTTTTTTAATCCTTATCATCACTCCAAAAGCACCAAGTCTGAACACAATACTGAATAACGGCA
ACTTTCTGTTATTTTACCTATACAGTAATGCATCAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8688.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis