Browse Element(s) Details


Os.8740.1.S1_at

Description gb:AK111618.1
DB_XREF= gi:37988281
TID=Os.8740.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099H24, full insert sequence.
FL= gb:AK111618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1453010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14490OsAffx.2608.1.S1_at11/112+7986052..7988629myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g14500OsAffx.32134.3.S1_at3/112+7993024..7996668expressed protein
LOC_Os02g14510NANA2+7997538..7997864hypothetical protein
LOC_Os02g14520Os.52305.1.S1_at1/112+7998421..8002013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g14530Os.8740.1.S1_at10/112+8004992..8017327protein kinase family protein, putative, expressed
LOC_Os02g14540OsAffx.24252.1.S1_x_at3/112+8018191..8019354hydroquinone glucosyltransferase, putative
LOC_Os02g14550OsAffx.23366.2.S1_s_at1/112+8021940..8026355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14560Os.46314.3.S1_at3/112+8027852..8031438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14560OsAffx.7362.1.S1_x_at1/112+8027852..8031438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14570OsAffx.24252.1.S1_x_at11/112+8033998..8035452UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14580OsAffx.12037.1.S1_at11/112+8041112..8048125retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8740.1.S1_at--670--8411Chr02:8015488..8015512 (25 bp)
GGCCCCTGAGCTTATTCGTAATGAA
LOC_Os02g14530
Os.8740.1.S1_at--197--7411Chr02:8015529..8015553 (25 bp)
GTGATATCTTCAGCCTTGGAGTTAT
LOC_Os02g14530
Os.8740.1.S1_at--821--411Chr02:8015552..8015576 (25 bp)
ATCATGTGGGAGCTTTGCACTCTGA
LOC_Os02g14530
Os.8740.1.S1_at--148--9031Chr02:8015567..8015591 (25 bp)
TGCACTCTGAGTAGGCCTTGGGAAG
LOC_Os02g14530
Os.8740.1.S1_at--531--3091Chr02:8015727..8015751 (25 bp)
AATACCAGATGGACCTCTCGGAAGC
LOC_Os02g14530
Os.8740.1.S1_at--758--9791Chr02:8016963..8016987 (25 bp)
TAAGCGTCCAGGTTGCCAGGAGATT
LOC_Os02g14530
Os.8740.1.S1_at--248--4931Chr02:8016995..8017019 (25 bp)
GCTTGCTTGACTGCGAATACACCTT
LOC_Os02g14530
Os.8740.1.S1_at--1042--351Chr02:8017028..8017052 (25 bp)
ATAATCTGCCTCTGGTCTGTATAGC
LOC_Os02g14530
Os.8740.1.S1_at--1020--3651Chr02:8017080..8017104 (25 bp)
CTTATACATCGTTTCTTTTTCCCAT
LOC_Os02g14530
Os.8740.1.S1_at--66--4031Chr02:8017226..8017250 (25 bp)
CGTTTCATCATTTTCCATGGTTCCA
LOC_Os02g14530
Os.8740.1.S1_at--1017--4091Chr02:8017304..8017328 (25 bp)
TGTCCCTTTCCCAGTTACGAAGTGA
NONE
Target Sequence 
GGCCCCTGAGCTTATTCGTAATGAACCATTTACAGAGAAGTGTGATATCTTCAGCCTTGGAGTTATCATGTGGGAGCTTT
GCACTCTGAGTAGGCCTTGGGAAGGAATACCGTCAGTTCAGGTGGTTTNTAATGTGGCGAATGAAGGGGCACGGTTGGAA
ATACCAGATGGACCTCTCGGAAGCCTGATAGCTGATTGCTGGGCGGAACCGGATAAGCGTCCAGGTTGCCAGGAGATTCT
CACCCGCTTGCTTGACTGCGAATACACCTTATGTTGAGATAATCTGCCTCTGGTCTGTATAGCGGTTTTAGAGGCAGCGA
ATTGGTTCGGCTTATACATCGTTTCTTTTTCCCATTTCTCATCATTTTGACATCGTTGATGATGTAAATTGGCAACCTGT
ACTATAATAAGCAAGCCTCAAAGCATCTTTAATGTTACACCATTGGTCGTGTGACCATTTTCCATGGTACTCCCTCCGTT
TCATCATTTTCCATGGTTCCATGGTACCATTTTACCCGCAGCCATCATTTACCAAATATTGGACCTCCGAGTTTTGTCCC
TTTCCCAGTTACGAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis