Browse Element(s) Details


Os.8760.1.S1_a_at

Description gb:AK099869.1
DB_XREF= gi:32985078
TID=Os.8760.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.8760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E22, full insert sequence.
FL= gb:AK099869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3660011/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os09g36560OsAffx.30155.1.S1_x_at10/119+21088365..21090101Thaumatin-like protein 1 precursor, putative
LOC_Os09g36569NANA9+21096640..21097232NA
LOC_Os09g36580Os.52573.1.S1_at11/119+21097786..21100718Thaumatin family protein, expressed
LOC_Os09g36590NANA9+21104147..21107795retrotransposon protein, putative, LINE subclass
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8760.1.S1_a_at--462--5151Chr09:21111014..21111038 (25 bp)
GCAACACCTGTGTTGGTGCGCACTG
LOC_Os09g36600
Os.8760.1.S1_a_at--521--8791Chr09:21110978..21111002 (25 bp)
TGTTCGTGGTCATGGCGATTGCCTG
LOC_Os09g36600
Os.8760.1.S1_a_at--305--71Chr09:21110961..21110985 (25 bp)
ATTGCCTGCGTCGTCGGGTTCGGTT
LOC_Os09g36600
Os.8760.1.S1_a_at--1005--6711Chr09:21110944..21110968 (25 bp)
GTTCGGTTTGGATGTCTTGCTGTGC
LOC_Os09g36600
Os.8760.1.S1_a_at--655--6031Chr09:21110851..21110875 (25 bp)
GAGGGTAAGCTAGCCAAAACCTACA
LOC_Os09g36600
Os.8760.1.S1_a_at--752--2971Chr09:21110815..21110839 (25 bp)
AATGGTACAGATTCGCGCAATTGCA
LOC_Os09g36600
Os.8760.1.S1_a_at--1123--6551Chr09:21110778..21110802 (25 bp)
GATTCAACGAGTGCAGGTTCTGTAA
LOC_Os09g36600
Os.8760.1.S1_a_at--273--6871Chr09:21110685..21110709 (25 bp)
GTATAGTTTAACTGCCACGGAGGTT
LOC_Os09g36600
Os.8760.1.S1_a_at--529--5191Chr09:21110643..21110667 (25 bp)
GCAATGTTTGCCCTGTGTGTGTAAT
LOC_Os09g36600
Os.8760.1.S1_a_at--103--2031Chr09:21110600..21110624 (25 bp)
ACTACTGACTGAGAGGCTGCAGATT
LOC_Os09g36600
Os.8760.1.S1_a_at--773--51Chr09:21110490..21110514 (25 bp)
ATTGTTGTGCAATTAGCCTGTTGGC
LOC_Os09g36600
Target Sequence 
GCAACACCTGTGTTGGTGCGCACTGCTACCGCCTCGTGTTCGTGGTCATGGCGATTGCCTGCGTCGTCGGGTTCGGTTTG
GATGTCTTGCTGTGCTTCAGGACCAAGAGGGTGTATGCCAAGATCCATGAGAGCAAGAGGCAGAGCAGGTCGGCAGTTGT
GCAGAGGGTAAGCTAGCCAAAACCTACAGCTATGAGAAAAATGGTACAGATTCGCGCAATTGCATCAAGATTCAATGATT
CAACGAGTGCAGGTTCTGTAAATTTTGTGCAAATAAGAGGATCCCATGTCTTGATTCTTTGGAATTAGATGGATGGATCC
ATTCAATCGGTATAGTTTAACTGCCACGGAGGTTTNTAGGGGCTGATTCGAGCAATGTTTGCCCTGTGTGTGTAATTCAG
TACTAGTACTGACTACTACTGACTGAGAGGCTGCAGATTGTGGAGTTGTCTGATCCCTCGGTGTAATCAGTTTAGTCAGT
GTATCCTTGAGGAAATGTATTCTCGGTTTTAGCCTGTACGATGAATTGTTGTGCAATTAGCCTGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8760.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis