Browse Element(s) Details


Os.8760.2.S1_a_at

Description gb:AK105374.1
DB_XREF= gi:32990583
TID=Os.8760.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D05, full insert sequence.
FL= gb:AK105374.1 gb:AK072288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3660011/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os09g36560OsAffx.30155.1.S1_x_at10/119+21088365..21090101Thaumatin-like protein 1 precursor, putative
LOC_Os09g36569NANA9+21096640..21097232NA
LOC_Os09g36580Os.52573.1.S1_at11/119+21097786..21100718Thaumatin family protein, expressed
LOC_Os09g36590NANA9+21104147..21107795retrotransposon protein, putative, LINE subclass
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8760.2.S1_a_at--150--4131Chr09:21112776..21112800 (25 bp)
CGCACGTGGCGTGGAAGTCCTGGAT
LOC_Os09g36600
Os.8760.2.S1_a_at--453--5371Chr09:21112751..21112775 (25 bp)
GAAGACGCGGAAGCTCGCGAACGCC
LOC_Os09g36600
Os.8760.2.S1_a_at--728--971Chr09:21112617..21112641 (25 bp)
AGGAGCACACGATCGCGCAGGCGCT
LOC_Os09g36600
Os.8760.2.S1_a_at--890--2171Chr09:21112611..21112635 (25 bp)
ACACGATCGCGCAGGCGCTCATGTC
LOC_Os09g36600
Os.8760.2.S1_a_at--680--771Chr09:21112591..21112615 (25 bp)
ATGTCGCTGGACTTCTGGCTCATGT
LOC_Os09g36600
Os.8760.2.S1_a_at--913--9611Chr09:21112572..21112596 (25 bp)
TCATGTTCGCGTCGTTCCTGATGGG
LOC_Os09g36600
Os.8760.2.S1_a_at--868--4011Chr09:21112563..21112587 (25 bp)
CGTCGTTCCTGATGGGCGTCGGCAC
LOC_Os09g36600
Os.8760.2.S1_a_at--1039--791Chr09:21112507..21112531 (25 bp)
ATGGGCGTCGCCATGGGCTACTCCG
LOC_Os09g36600
Os.8760.2.S1_a_at--262--7231Chr09:21112501..21112525 (25 bp)
GTCGCCATGGGCTACTCCGACGTCT
LOC_Os09g36600
Os.8760.2.S1_a_at--302--10631Chr09:21112471..21112495 (25 bp)
TTCGTCTCCATGACCAGCATCTGGG
LOC_Os09g36600
Os.8760.2.S1_a_at--627--8091Chr09:21112422..21112446 (25 bp)
GGACCATCTCCGAGCACTTCATCAA
LOC_Os09g36600
Target Sequence 
CGCACGTGGCGTGGAAGTCCTGGATGAAGACGCGGAAGCTCGCGAACGCCGACGTCGAGGAGGCGGAGGAGTGCGCGTCC
GCCCCGCTCCTCGTGGCGAAGGCGACGGCGGCGGCGGCGGCGGAGGCGCGCGGCCCCGGCGAGAAGCCGGTGCTCGGGGA
GGAGCACACGATCGCGCAGGCGCTCATGTCGCTGGACTTCTGGCTCATGTTCGCGTCGTTCCTGATGGGCGTCGGCACGG
GGCTCGCCGTGATGAACAACCTGGGGCAGATGGGCGTCGCCATGGGCTACTCCGACGTCTCCCTCTTCGTCTCCATGACC
AGCATCTGGGGATTCTTCNGCCGCATCGCCTCCGGGACCATCTCCGAGCACTTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8760.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis