Browse Element(s) Details


Os.8805.1.S1_at

Description gb:AK103839.1
DB_XREF= gi:32989048
TID=Os.8805.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoenolpyruvate carboxykinase (OSJNBa0004P12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148H10, full insert sequence.
FL= gb:AK103839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1370011/11Phosphoenolpyruvate carboxykinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13700Os.8805.1.S1_at11/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13700Os.24219.1.A1_at1/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13710OsAffx.30217.1.S1_x_at2/1110+7216381..7217870hypothetical protein
LOC_Os10g13710OsAffx.10222.1.S1_x_at1/1110+7216381..7217870hypothetical protein
LOC_Os10g13730NANA10+7222925..7224950Transposable element protein, putative, Retrotrans_gag
LOC_Os10g13740NANA10+7232752..7235090retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006094biological_processgluconeogenesis
GO:0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8805.1.S1_at--501--2831Chr10:7204170..7204193 (24 bp)
AAGTTATGGTGTAGGTGAGCGAATC
LOC_Os10g13700
Os.8805.1.S1_at--692--5871Chr10:7204154..7204178 (25 bp)
GAGCGAATCAGCTTGGCCTACACAA
LOC_Os10g13700
Os.8805.1.S1_at--1019--4431Chr10:7204139..7204163 (25 bp)
GCCTACACAAGGAAAATCATCGATG
LOC_Os10g13700
Os.8805.1.S1_at--1127--3531Chr10:7204122..7204146 (25 bp)
CATCGATGCCATTCACTCGGGTGAG
LOC_Os10g13700
Os.8805.1.S1_at--1071--3311Chr10:7204109..7204133 (25 bp)
CACTCGGGTGAGCTTTTGGCTAGAA
LOC_Os10g13700
Os.8805.1.S1_at--471--8511Chr10:7204062..7204086 (25 bp)
TGGACTAGACATCCCCACAAAAGTG
LOC_Os10g13700
Os.8805.1.S1_at--753--6691Chr10:7204031..7204055 (25 bp)
GTTCCATCTGAATTGCTTGACCCAA
LOC_Os10g13700
Os.8805.1.S1_at--251--31Chr10:7204023..7204044 (22 bp)
ATTGCTTGACCCAATAAATACCTGG
LOC_Os10g13700
Os.8805.1.S1_at--125--5491Chr10:7203890..7203914 (25 bp)
GACACTTCTAAAGCTGTCAGATCTG
LOC_Os10g13700
Os.8805.1.S1_at--1044--8791Chr10:7203715..7203739 (25 bp)
TGTTCCTCGAGGATGTATCGCAAGG
LOC_Os10g13700
Os.8805.1.S1_at--419--6911Chr10:7203701..7203725 (25 bp)
GTATCGCAAGGTACCACTTATTTTA
LOC_Os10g13700
Target Sequence 
AAGTTATGGTGTAGGTGAGCGAATCAGCTTGGCCTACACAAGGAAAATCATCGATGCCATTCACTCGGGTGAGCTTTTGG
CTAGAAGCTACAAAAAGACAGATGTCTTTGGACTAGACATCCCCACAAAAGTGGAAGGAGTTCCATCTGAATTGCTTGAC
CCAATAAATACCTGGGAAGACAAAGACTCATACAAGTTGACACTTCTAAAGCTGTCAGATCTGTTCAAGAGAAATTTCAA
GGTATTTGCAAATTACAAGAAAGGTGGTGTTAGTGATCTGGCTGATGAGATTGCTGCTGCAGGACCAAATTTCTGATTTT
AATTGAATAGTAGTAGTATGTCTTAATGTATACCAAATAAAAGGGATTTTTTTATGTTCCTCGAGGATGTATCGCAAGGT
ACCACTTATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis