Browse Element(s) Details


Os.8815.1.S1_at

Description gb:AK070886.1
DB_XREF= gi:32980909
TID=Os.8815.1
CNT=59
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.8815 (NCBI UniGene Cluster)
UG_TITLE=O. sativa mRNA for alcohol dehydrogenase 2
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069O03, full insert sequence.
FL= gb:AK102799.1 gb:AK070886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1051011/11Alcohol dehydrogenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10490OsAffx.32023.1.S1_at10/1111+5724289..5728101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10500OsAffx.10633.1.S1_at8/1111+5732590..5738801retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10510Os.8815.1.S1_at11/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.57464.1.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.12591.2.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.11991.1.S1_at11/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.57464.1.S1_x_at1/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8815.1.S1_at--823--3831Chr11:5741370..5741392 (23 bp)
CTGCTTCGAATGTGTCCATGATGGA
LOC_Os11g10510
Os.8815.1.S1_at--951--9171Chr11:5741188..5741212 (25 bp)
TGCCGACCAAGGATGATGTGTTCAA
LOC_Os11g10510
Os.8815.1.S1_at--353--6731Chr11:5741118..5741142 (25 bp)
GTTCTTCGGTAACTACAAGCCGCGC
LOC_Os11g10510
Os.8815.1.S1_at--759--1931Chr11:5740864..5740888 (25 bp)
ACGGCGTTCGATCTCATGCTCAAGG
LOC_Os11g10510
Os.8815.1.S1_at--161--1351Chr11:5740836..5740860 (25 bp)
AGAGTCTCCGCTGCGTCATGAGGAT
LOC_Os11g10510
Os.8815.1.S1_at--210--9511Chr11:5740773..5740797 (25 bp)
TCTCTCTTGCAGTTTCAGTGCATAC
LOC_Os11g10510
Os.8815.1.S1_at--896--4931Chr11:5740668..5740692 (25 bp)
GCTTGTGTGGAGTCAGCTCTGTTTA
LOC_Os11g10510
Os.8815.1.S1_at--669--10471Chr11:5740646..5740670 (25 bp)
TTACTCCCTCCTTTCATGGCTTGAT
LOC_Os11g10510
Os.8815.1.S1_at--716--8291Chr11:5740629..5740653 (25 bp)
GGCTTGATCTTGTTTATTGTCAGCA
LOC_Os11g10510
Os.8815.1.S1_at--579--9651Chr11:5740610..5740634 (25 bp)
TCAGCATTGTGGCTTAGCAGATTTT
LOC_Os11g10510
Os.8815.1.S1_at--1141--1511Chr11:5740595..5740619 (25 bp)
AGCAGATTTTCACCAGTTTTACCCT
LOC_Os11g10510
Target Sequence 
CTGCTTCGAATGTGTCCATGATGGATGGGGCGTTGCGGTGCTGGTCGGCGTGCCGACCAAGGATGATGTGTTCAAGACCC
ACCCGATGAACTTCCTCAACGAGAAGACGCTCAAGGGGACGTTCTTCGGTAACTACAAGCCGCGCACCGACCTGCCCAAC
GTCGTCGAGCTGTACATGAAGAAGGAGCTGGAGCTGGAGAAGTTCATCACGCACAGCGTGCCGTTCTCGGAGATCAACAC
GGCGTTCGATCTCATGCTCAAGGGGGGAGAGTCTCCGCTGCGTCATGAGGATGGATGAGTAGAGATGATGATGATCTATC
TCTCTCTCTCTCTCTCTTGCAGTTTCAGTGCATACAAGAAACCAAAAATGAAAGCAAAAAAATGGATGAGAAGTTTGAGG
TTTTCCATTTAAGTTTAATAATGGTCGTGAGACAGGGCTTGTGTGGAGTCAGCTCTGTTTACTCCCTCCTTTCATGGCTT
GATCTTGTTTATTGTCAGCATTGTGGCTTAGCAGATTTTCACCAGTTTTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis